Evidence map›Paper›PMID 37596438›Full record

ArticleMolecular neurobiology2024

Application of a Multiplex Ligation-Dependent Probe Amplification-Based Next-Generation Sequencing Approach for the Detection of Pathogenesis of Duchenne Muscular Dystrophy and Spinal Muscular Atrophy Caused by Copy Number Aberrations.

Yongchen Yang, Chaoran Xia, Xiaozhen Song, Xiaojun Tang, Xueling Nie, Wuhen Xu, Chengkan Du, Hong Zhang, Peng Luo

Open access · hybridAbstract read
In one paragraph

Article in Molecular neurobiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yongchen Yang *Department of Laboratory Medicine, Shanghai Children's Hospital, School of Medicine, Shanghai Jiao Tong University, Building 7, 24, Lane 1400, West Beijing Road, Jing'an, Shanghai, 200040, People's Republic of China. yangyc@shchildren.com.cn.ORCID http://orcid.org/0000-0001-7063-6707
Chaoran Xia *Zhejiang Shaoxing Topgen Biomedical Technology Co. Ltd. Block B, Building 19, No. 3399 Kangxin Road, Pudong District, Shanghai, 201321, People's Republic of China. andrea169@sjtu.edu.cn.
Xiaozhen SongDepartment of Laboratory Medicine, Shanghai Children's Hospital, School of Medicine, Shanghai Jiao Tong University, Building 7, 24, Lane 1400, West Beijing Road, Jing'an, Shanghai, 200040, People's Republic of China.
Xiaojun TangDepartment of Laboratory Medicine, Shanghai Children's Hospital, School of Medicine, Shanghai Jiao Tong University, Building 7, 24, Lane 1400, West Beijing Road, Jing'an, Shanghai, 200040, People's Republic of China.
Xueling NieShanghai Shiji Medical Laboratory Institute, Floor 5, No. 3805, Zhoujiazui Road, Yangpu District, Shanghai, 200093, People's Republic of China.
Wuhen XuDepartment of Laboratory Medicine, Shanghai Children's Hospital, School of Medicine, Shanghai Jiao Tong University, Building 7, 24, Lane 1400, West Beijing Road, Jing'an, Shanghai, 200040, People's Republic of China.
Chengkan DuDepartment of Laboratory Medicine, Shanghai Children's Hospital, School of Medicine, Shanghai Jiao Tong University, Building 7, 24, Lane 1400, West Beijing Road, Jing'an, Shanghai, 200040, People's Republic of China.
Hong ZhangDepartment of Laboratory Medicine, Shanghai Children's Hospital, School of Medicine, Shanghai Jiao Tong University, Building 7, 24, Lane 1400, West Beijing Road, Jing'an, Shanghai, 200040, People's Republic of China.
Peng LuoZhejiang Shaoxing Topgen Biomedical Technology Co. Ltd. Block B, Building 19, No. 3399 Kangxin Road, Pudong District, Shanghai, 201321, People's Republic of China.
Shanghai Jiao Tong University · CNZhejiang Medicine (China) · CN

Funding

The Shanghai Children's Hospital 2019XGJC03
6 · The paper itself

Abstract

Both Duchenne muscular dystrophy (DMD; OMIM no. 310200) and spinal muscular atrophy (SMA; OMIM no. 253300/253550/253400/271150) are genetic disorders characterized by progressive muscle degeneration and weakness. Genetic copy number aberrations in the pathogenetic genes DMD and SMN1 lead to alterations in functional proteins, resulting in DMD and SMA, respectively. Multiplex ligation-dependent probe amplification (MLPA) has become a standard method for the detection of common copy number aberrations (CNAs), including DMD and SMN1 deletions, both of which are associated with poor clinical outcomes. However, traditional MLPA assays only accommodate a maximum of 60 MLPA probes per test. To increase the number of targeted sequences in one assay, an MLPA-based next-generation sequencing (NGS) assay has been developed that is based on the standard MLPA procedure, allows high-throughput screening for a large number of fragments and samples by integrating additional indices for detection, and can be analyzed on all Illumina NGS platforms.

Indexed as

Muscular Atrophy, SpinalMuscular Dystrophy, DuchenneDNA Copy Number VariationsDystrophinHigh-Throughput Nucleotide SequencingHumansMultiplex Polymerase Chain ReactionDystrophinCopy number aberrations (CNAs)Duchenne muscular dystrophy (DMD)Multiplex ligation-dependent probe amplification (MLPA)Next-generation sequencing (NGS)Spinal muscular atrophy (SMA)

Identifiers

PMID37596438
PMCPMC10791777
OpenAlexW4385972669

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.