Evidence map›Paper›PMID 37596349›Full record

ArticleISME communications2023

Ocean-wide comparisons of mesopelagic planktonic community structures.

Janaina Rigonato, Marko Budinich, Alejandro A Murillo, Manoela C Brandão, Juan J Pierella Karlusich, Yawouvi Dodji Soviadan, Ann C Gregory, Hisashi Endo, Florian Kokoszka, Dean Vik and 26 more

Abstract read
In one paragraph

Article in ISME communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors.

Janaina Rigonato *Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France. jrigonat@genoscope.cns.fr.ORCID http://orcid.org/0000-0002-1937-7030
Marko Budinich *Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, 29680, Roscoff, France.
Alejandro A MurilloStructural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117, Heidelberg, Germany.
Manoela C BrandãoSorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, 06230, Villefranche-sur-Mer, France.ORCID http://orcid.org/0000-0003-3226-8514
Juan J Pierella KarlusichInstitut de Biologie de l'ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.ORCID http://orcid.org/0000-0003-1739-4424
Yawouvi Dodji SoviadanSorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, 06230, Villefranche-sur-Mer, France.
Ann C GregoryDepartment of Microbiology, The Ohio State University, Columbus, OH, 43214, USA.
Hisashi EndoBioinformatics Center, Institute for Chemical Research Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan.ORCID http://orcid.org/0000-0003-0016-1624
Florian KokoszkaInstitut de Biologie de l'ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.
Dean VikDepartment of Microbiology, The Ohio State University, Columbus, OH, 43214, USA.
Nicolas HenryResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.ORCID http://orcid.org/0000-0002-7702-1382
Paul FrémontGénomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France.ORCID http://orcid.org/0000-0001-6934-3018
Karine LabadieGénomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France.
Ahmed A ZayedDepartment of Microbiology, The Ohio State University, Columbus, OH, 43214, USA.ORCID http://orcid.org/0000-0003-2793-2679
Céline DimierSorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, 06230, Villefranche-sur-Mer, France.
Marc PicheralResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Sarah SearsonSorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, 06230, Villefranche-sur-Mer, France.
Julie PoulainGénomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France.
Stefanie KandelsStructural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117, Heidelberg, Germany.
Stéphane PesantMARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.
Eric KarsentiInstitut de Biologie de l'ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.
Tara Oceans coordinators
Peer BorkStructural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-2627-833X
Chris BowlerResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.ORCID http://orcid.org/0000-0003-3835-6187
Colomban de VargasResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Damien EveillardResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.ORCID http://orcid.org/0000-0002-8162-7360
Marion GehlenInstitut Pierre Simon Laplace, Laboratoire des Sciences du Climat et de l'Environnement, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette cedex, France.ORCID http://orcid.org/0000-0002-9688-0692
Daniele IudiconeStazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.ORCID http://orcid.org/0000-0002-7473-394X
Fabien LombardResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.ORCID http://orcid.org/0000-0002-8626-8782
Hiroyuki OgataBioinformatics Center, Institute for Chemical Research Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan.ORCID http://orcid.org/0000-0001-6594-377X
Lars StemmannResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.ORCID http://orcid.org/0000-0001-8935-4531
Matthew B SullivanDepartment of Microbiology, The Ohio State University, Columbus, OH, 43214, USA.ORCID http://orcid.org/0000-0001-8398-8234
Shinichi SunagawaStructural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-3065-0314
Patrick WinckerGénomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France.ORCID http://orcid.org/0000-0001-7562-3454
Samuel ChaffronResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.ORCID http://orcid.org/0000-0001-5903-617X
Olivier JaillonGénomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France. ojaillon@genoscope.cns.fr.ORCID http://orcid.org/0000-0002-7237-9596

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For decades, marine plankton have been investigated for their capacity to modulate biogeochemical cycles and provide fishery resources. Between the sunlit (epipelagic) layer and the deep dark waters, lies a vast and heterogeneous part of the ocean: the mesopelagic zone. How plankton composition is shaped by environment has been well-explored in the epipelagic but much less in the mesopelagic ocean. Here, we conducted comparative analyses of trans-kingdom community assemblages thriving in the mesopelagic oxygen minimum zone (OMZ), mesopelagic oxic, and their epipelagic counterparts. We identified nine distinct types of intermediate water masses that correlate with variation in mesopelagic community composition. Furthermore, oxygen, NO

Identifiers

PMID37596349
PMCPMC10439195

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