Evidence map›Paper›PMID 37596312›Full record

ArticleISME communications2023

Geochemical constraints on bacteriophage infectivity in terrestrial environments.

Hans K Carlson, Denish Piya, Madeline L Moore, Roniya T Magar, Nathalie H Elisabeth, Adam M Deutschbauer, Adam P Arkin, Vivek K Mutalik

Open access · goldAbstract read
In one paragraph

Article in ISME communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. A Novel Lytic Podovirus AP-20-A InfectingInternational journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hans K CarlsonEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA. hkcarlson@lbl.gov.ORCID http://orcid.org/0000-0002-1583-5313
Denish PiyaDepartment of Bioengineering, University of California, Berkeley, Berkeley, CA, 94720, USA.
Madeline L MooreEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA.
Roniya T MagarEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA.
Nathalie H ElisabethMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA.
Adam M DeutschbauerEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0003-2728-7622
Adam P ArkinEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-4999-2931
Vivek K MutalikEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA. vkmutalik@lbl.gov.ORCID http://orcid.org/0000-0001-7934-0400
Lawrence Berkeley National Laboratory · USUniversity of California, Berkeley · US

Funding

U.S. Department of Energy (DOE) DE-AC02-05CH11231
6 · The paper itself

Abstract

Lytic phages can be potent and selective inhibitors of microbial growth and can have profound impacts on microbiome composition and function. However, there is uncertainty about the biogeochemical conditions under which phage predation modulates microbial ecosystem function, particularly in terrestrial systems. Ionic strength is critical for infection of bacteria by many phages, but quantitative data is limited on the ion thresholds for phage infection that can be compared with environmental ion concentrations. Similarly, while carbon composition varies in the environment, we do not know how this variability influences the impact of phage predation on microbiome function. Here, we measured the half-maximal effective concentrations (EC

Identifiers

PMID37596312
PMCPMC10439110
OpenAlexW4385986351

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.