Evidence map›Paper›PMID 37594978›Full record

ArticlePloS one2023

Complex organic matter degradation by secondary consumers in chemolithoautotrophy-based subsurface geothermal ecosystems.

Raegan Paul, Timothy J Rogers, Kate M Fullerton, Matteo Selci, Martina Cascone, Murray H Stokes, Andrew D Steen, J Maarten de Moor, Agostina Chiodi, Andri Stefánsson and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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  6. Journal of microbiology and biotechnology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 7 countries.

Raegan PaulMicrobiology Department, University of Tennessee, Knoxville, TN, United States of America.ORCID 0000-0002-6413-082X
Timothy J RogersMicrobiology Department, University of Tennessee, Knoxville, TN, United States of America.
Kate M FullertonMicrobiology Department, University of Tennessee, Knoxville, TN, United States of America.
Matteo SelciDepartment of Biology, University of Naples "Federico II", Naples, Italy.
Martina CasconeDepartment of Biology, University of Naples "Federico II", Naples, Italy.
Murray H StokesMicrobiology Department, University of Tennessee, Knoxville, TN, United States of America.
Andrew D SteenMicrobiology Department, University of Tennessee, Knoxville, TN, United States of America.ORCID 0000-0003-4297-4332
J Maarten de MoorObservatorio Volcanológico y Sismológico de Costa Rica (OVSICORI) Universidad Nacional, Heredia, Costa Rica.
Agostina ChiodiInstituto de Bio y Geociencias del NOA (IBIGEO, UNSa-CONICET), Salta, Argentina.
Andri StefánssonNordVulk, Institute of Earth Sciences, University of Iceland, Reykjavík, Iceland.
Sæmundur A HalldórssonNordVulk, Institute of Earth Sciences, University of Iceland, Reykjavík, Iceland.
Carlos J RamirezServicio Geologico Ambiental, Heredia, Costa Rica.
Gerdhard L JessenInstituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile.
Peter H BarryMarine Chemistry & Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA, United States of America.ORCID 0000-0002-6960-1555
Angelina CordoneDepartment of Biology, University of Naples "Federico II", Naples, Italy.
Donato GiovannelliDepartment of Biology, University of Naples "Federico II", Naples, Italy.
Karen G LloydMicrobiology Department, University of Tennessee, Knoxville, TN, United States of America.ORCID 0000-0003-0914-6375
University of Tennessee at Knoxville · USUniversity of Naples Federico II · ITUniversity of Iceland · ISAustral University of Chile · CLConsejo Nacional de Investigaciones Científicas y Técnicas · ARRutgers, The State University of New Jersey · USUniversity of New Mexico · USWoods Hole Oceanographic Institution · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial communities in terrestrial geothermal systems often contain chemolithoautotrophs with well-characterized distributions and metabolic capabilities. However, the extent to which organic matter produced by these chemolithoautotrophs supports heterotrophs remains largely unknown. Here we compared the abundance and activity of peptidases and carbohydrate active enzymes (CAZymes) that are predicted to be extracellular identified in metagenomic assemblies from 63 springs in the Central American and the Andean convergent margin (Argentinian backarc of the Central Volcanic Zone), as well as the plume-influenced spreading center in Iceland. All assemblies contain two orders of magnitude more peptidases than CAZymes, suggesting that the microorganisms more often use proteins for their carbon and/or nitrogen acquisition instead of complex sugars. The CAZy families in highest abundance are GH23 and CBM50, and the most abundant peptidase families are M23 and C26, all four of which degrade peptidoglycan found in bacterial cells. This implies that the heterotrophic community relies on autochthonous dead cell biomass, rather than allochthonous plant matter, for organic material. Enzymes involved in the degradation of cyanobacterial- and algal-derived compounds are in lower abundance at every site, with volcanic sites having more enzymes degrading cyanobacterial compounds and non-volcanic sites having more enzymes degrading algal compounds. Activity assays showed that many of these enzyme classes are active in these samples. High temperature sites (> 80°C) had similar extracellular carbon-degrading enzymes regardless of their province, suggesting a less well-developed population of secondary consumers at these sites, possibly connected with the limited extent of the subsurface biosphere in these high temperature sites. We conclude that in < 80°C springs, chemolithoautotrophic production supports heterotrophs capable of degrading a wide range of organic compounds that do not vary by geological province, even though the taxonomic and respiratory repertoire of chemolithoautotrophs and heterotrophs differ greatly across these regions.

Identifiers

PMID37594978
PMCPMC10437873
OpenAlexW4385972225

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.