Evidence map›Paper›PMID 37594844›Full record

ArticleJMIR formative research2023

A Deep Learning Model for the Normalization of Institution Names by Multisource Literature Feature Fusion: Algorithm Development Study.

Yifei Chen, Xiaoying Li, Aihua Li, Yongjie Li, Xuemei Yang, Ziluo Lin, Shirui Yu, Xiaoli Tang

Open access · goldAbstract read
In one paragraph

Article in JMIR formative research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yifei Chen *Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China.ORCID https://orcid.org/0009-0002-9393-6299
Xiaoying Li *Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China.ORCID https://orcid.org/0000-0003-4407-6616
Aihua LiInstitute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China.ORCID https://orcid.org/0000-0001-6742-3268
Yongjie LiInstitute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China.ORCID https://orcid.org/0009-0004-6306-8288
Xuemei YangInstitute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China.ORCID https://orcid.org/0000-0002-2927-4166
Ziluo LinInstitute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China.ORCID https://orcid.org/0000-0001-8384-1275
Shirui YuInstitute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China.ORCID https://orcid.org/0000-0002-5533-0010
Xiaoli TangInstitute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China.ORCID https://orcid.org/0000-0001-6946-3482
Chinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe normalization of institution names is of great importance for literature retrieval, statistics of academic achievements, and evaluation of the competitiveness of research institutions. Differences in authors' writing habits and spelling mistakes lead to various names of institutions, which affects the analysis of publication data. With the development of deep learning models and the increasing maturity of natural language processing methods, training a deep learning-based institution name normalization model can increase the accuracy of institution name normalization at the semantic level.

objectiveThis study aimed to train a deep learning-based model for institution name normalization based on the feature fusion of affiliation data from multisource literature, which would realize the normalization of institution name variants with the help of authority files and achieve a high specification accuracy after several rounds of training and optimization.

methodsIn this study, an institution name normalization-oriented model was trained based on bidirectional encoder representations from transformers (BERT) and other deep learning models, including the institution classification model, institutional hierarchical relation extraction model, and institution matching and merging model. The model was then trained to automatically learn institutional features by pretraining and fine-tuning, and institution names were extracted from the affiliation data of 3 databases to complete the normalization process: Dimensions, Web of Science, and Scopus.

resultsIt was found that the trained model could achieve at least 3 functions. First, the model could identify the institution name that is consistent with the authority files and associate the name with the files through the unique institution ID. Second, it could identify the nonstandard institution name variants, such as singular forms, plural changes, and abbreviations, and update the authority files. Third, it could identify the unregistered institutions and add them to the authority files, so that when the institution appeared again, the model could identify and regard it as a registered institution. Moreover, the test results showed that the accuracy of the normalization model reached 93.79%, indicating the promising performance of the model for the normalization of institution names.

conclusionsThe deep learning-based institution name normalization model trained in this study exhibited high accuracy. Therefore, it could be widely applied in the evaluation of the competitiveness of research institutions, analysis of research fields of institutions, and construction of interinstitutional cooperation networks, among others, showing high application value.

Indexed as

BERTbidirectional encoder representations from transformersdeep learninginstitution name normalizationmultisource literature

Identifiers

PMID37594844
PMCPMC10474509
OpenAlexW4380989093

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.