Evidence map›Paper›PMID 37594611›Full record

ArticleArchives of microbiology2023

Characterization of the transcriptional responses of Armillaria gallica 012m to GA3.

Guolei Cai, Yapu Cao, Menghua Tian, Haiying Mo, Xin Chen, Zhihao Li, Qiaolin Ji, Kaixiang He, Gang Du, Haiying Yang

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Biology · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Guolei Cai *Key Laboratory of Chemistry in Ethnic Medicinal Resources, State Ethnic Affairs Commission and Ministry of Education, Yunnan Minzu University, 2929 Yuehua Street, Chenggong District, Kunming, Yunnan, China.
Yapu Cao *Key Laboratory of Chemistry in Ethnic Medicinal Resources, State Ethnic Affairs Commission and Ministry of Education, Yunnan Minzu University, 2929 Yuehua Street, Chenggong District, Kunming, Yunnan, China.
Menghua TianZhaotong Tianma Research Institute, Zhaotong, Yunnan, China.
Haiying MoKey Laboratory of Chemistry in Ethnic Medicinal Resources, State Ethnic Affairs Commission and Ministry of Education, Yunnan Minzu University, 2929 Yuehua Street, Chenggong District, Kunming, Yunnan, China.
Xin ChenKey Laboratory of Chemistry in Ethnic Medicinal Resources, State Ethnic Affairs Commission and Ministry of Education, Yunnan Minzu University, 2929 Yuehua Street, Chenggong District, Kunming, Yunnan, China.
Zhihao LiKey Laboratory of Chemistry in Ethnic Medicinal Resources, State Ethnic Affairs Commission and Ministry of Education, Yunnan Minzu University, 2929 Yuehua Street, Chenggong District, Kunming, Yunnan, China.
Qiaolin JiKey Laboratory of Chemistry in Ethnic Medicinal Resources, State Ethnic Affairs Commission and Ministry of Education, Yunnan Minzu University, 2929 Yuehua Street, Chenggong District, Kunming, Yunnan, China.
Kaixiang HeSchool of Chemistry and Environment, Yunnan Minzu University, Kunming, China.
Gang DuKey Laboratory of Chemistry in Ethnic Medicinal Resources, State Ethnic Affairs Commission and Ministry of Education, Yunnan Minzu University, 2929 Yuehua Street, Chenggong District, Kunming, Yunnan, China. andydu60901@hotmail.com.
Haiying YangSchool of Chemistry and Environment, Yunnan Minzu University, Kunming, China. yanghy200401@hotmail.com.
State Ethnic Affairs Commission · CNMinzu University of China · CNTianma Microelectronics (China) · CN

Funding

National Natural Science Foundation of China 81860624
6 · The paper itself

Abstract

Gastrodia elata needs to establish a symbiotic relationship with Armillaria strains to obtain nutrients and energy. However, the signaling cross talk between G. elata and Armillaria strains is still unclear. During our experiment, we found that the vegetative mycelium of Armillaria gallica 012m grew significantly better in the media containing gibberellic acid (GA3) than the blank control group (BK). To explore the response mechanism, we performed an RNA-sequencing experiment to profile the transcriptome changes of A. gallica 012m cultured in the medium with exogenous GA3. The transcriptome-guided differential expression genes (DEGs) analysis of GA3 and BK showed that a total of 1309 genes were differentially expressed, including 361 upregulated genes and 948 downregulated genes. Some of those DEGs correlated with the biological process, including positive regulation of chromosome segregation, mitotic metaphase/anaphase transition, attachment of mitotic spindle microtubules to kinetochore, mitotic cytokinesis, and nuclear division. These analyses explained that GA3 actively promoted the growth of A. gallica to some extent. Further analysis of protein domain features showed that the deduced polypeptide contained 41 candidate genes of GA receptor, and 27 of them were expressed in our samples. We speculate that GA receptors exist in A. gallica 012m. Comparative studies of proteins showed that the postulated GA receptor domains of A. gallica 012m have a higher homologous correlation with fungi than others based on cluster analysis.

Indexed as

ArmillariaCluster AnalysisGene Expression ProfilingMyceliumDifferential expression genesGA receptorGibberellinResponseRNA-Seq

Identifiers

PMID37594611
OpenAlexW4385969419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.