Evidence map›Paper›PMID 37594081›Full record

ArticleG3 (Bethesda, Md.)2023

Reference genomes for BALB/c Nude and NOD/SCID mouse models.

Emanuel Schmid-Siegert, Mengting Qin, Huan Tian, Bulak Arpat, Bonnie Chen, Ioannis Xenarios

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Emanuel Schmid-SiegertJSR Life Sciences, NGS-AI CH Division Route de la Corniche 3, 1066 Epalinges, Switzerland.
Mengting QinJSR Life Sciences, NGS-AI CN Division, Industrial Park, Suzhou, Jiangsu 215000, P.R. China.
Huan TianJSR Life Sciences, NGS-AI CN Division, Industrial Park, Suzhou, Jiangsu 215000, P.R. China.
Bulak ArpatJSR Life Sciences, NGS-AI CH Division Route de la Corniche 3, 1066 Epalinges, Switzerland.
Bonnie ChenJSR Life Sciences, NGS-AI CN Division, Industrial Park, Suzhou, Jiangsu 215000, P.R. China.
Ioannis XenariosJSR Life Sciences, NGS-AI CH Division Route de la Corniche 3, 1066 Epalinges, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mouse xenograft models play a vital role in tumor studies for research as well as for screening of drugs for the pharmaceutical industry. In particular, models with compromised immunity are favorable to increase the success of transplantation, such as, e.g. NOD/SCID and BALB/c Nude strains. The genomic sequence and alterations of many of these models still remain elusive and might hamper a model's further optimization or proper adapted usage. This can be in respect to treatments (e.g. NOD/SCID sensitivity to radiation), experiments or analysis of derived sequencing data of such models. Here we present the genome assemblies for the NOD/SCID and BALB/c Nude strains to overcome this short-coming for the future and improve our understanding of these models in the process. We highlight as well first insights into observed genomic differences for these models compared to the C57BL/6 reference genome. Genome assemblies for both are close to full-chromosome representations and provided with liftover annotations from the GRCm39 reference genome.

Indexed as

Mice, SCIDAnimalsDisease Models, AnimalHumansMiceMice, Inbred BALB CMice, Inbred C57BLMice, Inbred NODBALB/c NudeMus musculusNOD/SCID

Identifiers

PMID37594081
PMCPMC10542179
OpenAlexW4385968919

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.