Evidence map›Paper›PMID 37592350›Full record

ArticleBMC research notes2023

Draft genome sequence of two "Candidatus Intestinicoccus colisanans" strains isolated from faeces of healthy humans.

Joyce Zhou, Joel A Boyd, Bozica Nyeverecz, Charlotte Vivian, Nicola Angel, David L A Wood, Philip Hugenholtz, Gene W Tyson, Lutz Krause, Páraic Ó Cuív

Abstract read
In one paragraph

Article in BMC research notes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Joyce Zhou *Microba Life Sciences, Queensland, Brisbane, Australia.
Joel A Boyd *Microba Life Sciences, Queensland, Brisbane, Australia.
Bozica NyevereczMicroba Life Sciences, Queensland, Brisbane, Australia.
Charlotte VivianMicroba Life Sciences, Queensland, Brisbane, Australia.
Nicola AngelMicroba Life Sciences, Queensland, Brisbane, Australia.
David L A WoodMicroba Life Sciences, Queensland, Brisbane, Australia.
Philip HugenholtzAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, Australia.
Gene W TysonMicroba Life Sciences, Queensland, Brisbane, Australia.
Lutz KrauseMicroba Life Sciences, Queensland, Brisbane, Australia. lutz.krause@microba.com.
Páraic Ó CuívMicroba Life Sciences, Queensland, Brisbane, Australia. paraic.ocuiv@microba.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesIn order to provide a better insight into the functional capacity of the human gut microbiome, we isolated a novel bacterium, "Candidatus Intestinicoccus colisanans" gen. nov. sp. nov., and performed whole genome sequencing. This study will provide new insights into the functional potential of this bacterium and its role in modulating host health and well-being. We expect that this data resource will be useful in providing additional insight into the diversity and functional potential of the human microbiome. DATA DESCRIPTION: Here, we report the first draft genome sequences of "Candidatus Intestinicoccus colisanans" strains MH27-1 and MH27-2, recovered from faeces collected from healthy human donors. The genomes were sequenced using short-read Illumina technology and whole-genome-based comparisons and phylogenomics reconstruction indicate that "Candidatus Intestinicoccus colisanans" represents a novel genus and species within the family Acutalibacteraceae. Both genomes were estimated to be > 98% completed and to range in size from 2.9 to 3.3 Mb with a G + C content of approximately 51%. The gene repertoire of "Candidatus Intestinicoccus colisanans" indicate it is likely a saccharolytic gut bacterium.

Indexed as

Gastrointestinal MicrobiomeFecesHealth StatusHumansPhylogenyTissue DonorsGutHealthHumanIntestinicoccus colisanansMicrobiomeUncultured

Identifiers

PMID37592350
PMCPMC10433555

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.