Evidence map›Paper›PMID 37592014›Full record

ArticleNature immunology2023

Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity.

Naomi Goldman, Aditi Chandra, Isabelle Johnson, Matthew A Sullivan, Abhijeet R Patil, Ashley Vanderbeck, Atishay Jay, Yeqiao Zhou, Emily K Ferrari, Leland Mayne and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
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  9. Article
  10. Biomolecular condensates in immune cell fate.Nature reviews. Immunology · 2025
    Review
  11. Review
  12. Article
  13. Transcriptional network dynamics in early T cell development.The Journal of experimental medicine · 2024
    Review
  14. Article
  15. Review
  16. CD4Nature immunology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Naomi GoldmanDepartment of Genetics, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.
Aditi Chandra *Department of Genetics, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.ORCID 0000-0001-5313-9418
Isabelle Johnson *Department of Genetics, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.ORCID 0009-0006-0357-6832
Matthew A SullivanInstitute for Immunology and Immune Health, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.ORCID 0000-0003-3651-0478
Abhijeet R PatilDepartment of Genetics, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.ORCID 0000-0003-1444-1555
Ashley VanderbeckInstitute for Immunology and Immune Health, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.
Atishay JayDepartment of Genetics, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.
Yeqiao ZhouInstitute for Immunology and Immune Health, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.
Emily K FerrariDepartment of Genetics, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-1453-9432
Leland MayneDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.
Jennifer AguilanDepartment of Biochemistry, Albert Einstein School of Medicine, New York City, NY, USA.
Hai-Hui XueCenter for Discovery and Innovation, Hackensack University Medical Center, Nutley, NJ, USA.ORCID 0000-0002-9163-7669
Robert B FaryabiInstitute for Immunology and Immune Health, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-7931-2175
E John WherryInstitute for Immunology and Immune Health, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.ORCID 0000-0003-0477-1956
Simone SidoliDepartment of Biochemistry, Albert Einstein School of Medicine, New York City, NY, USA.
Ivan MaillardInstitute for Immunology and Immune Health, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA.ORCID 0000-0003-1312-6748
Golnaz VahediDepartment of Genetics, University of Pennsylvania, Philadelphia, Philadelphia, PA, USA. vahedi@pennmedicine.upenn.edu.ORCID 0000-0002-2249-8247
University of Pennsylvania · USAlbert Einstein College of Medicine · USHackensack University Medical Center · USPenn Center for AIDS Research · USUniversity City Science Center · USUniversity of the Sciences · US

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Robert H. Vonderheide · 1985 to 2026
$222.3M
Human Pancreas Analysis Program for Type 1 Diabetes - HPAP-T1DU01DK112217 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MARK A. ATKINSON, KLAUS H KAESTNER · 2021 to 2026
$46.8M
Penn integrated Human Pancreas procurement and Analysis ProgramUC4DK112217 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI BETTS, MICHAEL R, FELDMAN, MICHAEL D · 2016 to 2020
$17.8M
Notch Signaling in AlloimmunityR01AI091627 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI PEAR, WARREN S · 2011 to 2025
$6.0M
VMD-PhD Training in Infectious Disease-Related ResearchT32AI070077 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Michael Lee Atchison · 2008 to 2026
$3.5M
3-Dimensional genomic architecture in innate lymphoid cells and allergic inflammationR01AI168240 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HENAO-MEJIA, JORGE, VAHEDI, GOLNAZ · 2022 to 2025
$3.2M
Single-cell dissection of chromatin architecture mechanisms connecting pathologic instability and transcriptional silencingU01DA052715 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI JAIN, RAJAN, JOYCE, ERIC F. · 2020 to 2024
$3.1M
3D genome organization of the Ets1-Fli1 locus controls allergic responsesR01AI168136 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Jorge Henao-Mejia, Golnaz Vahedi · 2023 to 2026
$3.1M
Critical role of TCF-1 on the epigenetic identity of memory T cellsR01HL145754 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI VAHEDI, GOLNAZ · 2019 to 2023
$2.3M
Notch-driven Epigenetic Program of MYC and CCND1 in Triple-Negative Breast CancerR01CA230800 · NCI · UNIVERSITY OF PENNSYLVANIA · PI FARYABI, ROBERT BABAK · 2020 to 2025
$2.1M
Epigenetic Mechanisms Underpinning Mantle Cell Lymphoma Sensitivity and Resistance to Notch InhibitorsR01CA248041 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Robert Babak Faryabi · 2022 to 2026
$2.1M
Dissecting transcriptomics and epigenomic signatures of immune cells in type 1 diabetesU01DK127768 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI VAHEDI, GOLNAZ, WHERRY, E. JOHN · 2020 to 2023
$2.0M
NCI NIH HHS P30 CA016520NCI NIH HHS R01 CA230800NCI NIH HHS R01 CA248041NHLBI NIH HHS R01 HL145754NIAID NIH HHS F30 AI161873NIAID NIH HHS F30 AI174776NIAID NIH HHS K22 AI112570NIAID NIH HHS R01 AI091627NIAID NIH HHS R01 AI168136NIAID NIH HHS R01 AI168240NIAID NIH HHS T32 AI070077NIDA NIH HHS U01 DA052715NIDDK NIH HHS U01 DK112217NIDDK NIH HHS U01 DK127768NIDDK NIH HHS UC4 DK112217
6 · The paper itself

Abstract

In development, pioneer transcription factors access silent chromatin to reveal lineage-specific gene programs. The structured DNA-binding domains of pioneer factors have been well characterized, but whether and how intrinsically disordered regions affect chromatin and control cell fate is unclear. Here, we report that deletion of an intrinsically disordered region of the pioneer factor TCF-1 (termed L1) leads to an early developmental block in T cells. The few T cells that develop from progenitors expressing TCF-1 lacking L1 exhibit lineage infidelity distinct from the lineage diversion of TCF-1-deficient cells. Mechanistically, L1 is required for activation of T cell genes and repression of GATA2-driven genes, normally reserved to the mast cell and dendritic cell lineages. Underlying this lineage diversion, L1 mediates binding of TCF-1 to its earliest target genes, which are subject to repression as T cells develop. These data suggest that the intrinsically disordered N terminus of TCF-1 maintains T cell lineage fidelity.

Indexed as

T-LymphocytesTranscription FactorsCell DifferentiationCell LineageChromatinT Cell Transcription Factor 1ChromatinT Cell Transcription Factor 1Transcription Factors

Identifiers

PMID37592014
PMCPMC10919931
OpenAlexW4385948732

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.