Evidence map›Paper›PMID 37591891›Full record

ArticleScientific reports2023

Genetic variation among elite inbred lines suggests potential to breed for BNI-capacity in maize.

César D Petroli, Guntur V Subbarao, Juan A Burgueño, Tadashi Yoshihashi, Huihui Li, Jorge Franco Duran, Kevin V Pixley

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

César D PetroliInternational Maize and Wheat Improvement Center (CIMMYT), Carretera México-Veracruz, Km. 45, El Batán, Texcoco, C.P. 56237, Mexico. c.petroli@cgiar.org.ORCID http://orcid.org/0000-0003-0502-248X
Guntur V SubbaraoJapan International Research Center for Agricultural Science, 1-1 Ohwashi, Tsukuba, Ibaraki, 305-8686, Japan.ORCID http://orcid.org/0000-0002-8981-1699
Juan A BurgueñoInternational Maize and Wheat Improvement Center (CIMMYT), Carretera México-Veracruz, Km. 45, El Batán, Texcoco, C.P. 56237, Mexico.ORCID http://orcid.org/0000-0002-1468-4867
Tadashi YoshihashiJapan International Research Center for Agricultural Science, 1-1 Ohwashi, Tsukuba, Ibaraki, 305-8686, Japan.ORCID http://orcid.org/0000-0002-6249-9981
Huihui LiInternational Maize and Wheat Improvement Center (CIMMYT), Carretera México-Veracruz, Km. 45, El Batán, Texcoco, C.P. 56237, Mexico.ORCID http://orcid.org/0000-0002-9117-5011
Jorge Franco DuranDepartamento de Biometría y Estadística, Facultad de Agronomía, Universidad de la República, Ruta 3, Km 363, C.P. 60000, Paysandú, Uruguay.ORCID http://orcid.org/0000-0001-8082-4007
Kevin V PixleyInternational Maize and Wheat Improvement Center (CIMMYT), Carretera México-Veracruz, Km. 45, El Batán, Texcoco, C.P. 56237, Mexico.ORCID http://orcid.org/0000-0003-4068-7436
Centro Internacional de Mejoramiento de Maíz Y Trigo · MXJapan International Research Center for Agricultural Sciences · JPUniversidad de la República de Uruguay · UY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biological nitrification inhibition (BNI) is a plant function where root systems release antibiotic compounds (BNIs) specifically aimed at suppressing nitrifiers to limit soil-nitrate formation in the root zone. Little is known about BNI-activity in maize (Zea mays L.), the most important food, feed, and energy crop. Two categories of BNIs are released from maize roots; hydrophobic and hydrophilic BNIs, that determine BNI-capacity in root systems. Zeanone is a recently discovered hydrophobic compound with BNI-activity, released from maize roots. The objectives of this study were to understand/quantify the relationship between zeanone activity and hydrophobic BNI-capacity. We assessed genetic variability among 250 CIMMYT maize lines (CMLs) characterized for hydrophobic BNI-capacity and zeanone activity, towards developing genetic markers linked to this trait in maize. CMLs with high BNI-capacity and ability to release zeanone from roots were identified. GWAS was performed using 27,085 SNPs (with unique positions on the B73v.4 reference genome, and false discovery rate = 10), and phenotypic information for BNI-capacity and zeanone production from root systems. Eighteen significant markers were identified; three associated with specific BNI-activity (SBNI), four with BNI-activity per plant (BNIPP), another ten were common between SBNI and BNIPP, and one with zeanone release. Further, 30 annotated genes were associated with the significant SNPs; most of these genes are involved in pathways of "biological process", and one (AMT5) in ammonium regulation in maize roots. Although the inbred lines in this study were not developed for BNI-traits, the identification of markers associated with BNI-capacity suggests the possibility of using these genomic tools in marker-assisted selection to improve hydrophobic BNI-capacity in maize.

Indexed as

NitrificationZea maysAnti-Bacterial AgentsPlant BreedingPolymorphism, Single NucleotideAnti-Bacterial Agents

Identifiers

PMID37591891
PMCPMC10435450
OpenAlexW4385932321

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.