Evidence map›Paper›PMID 37591878›Full record

ArticleNature communications2023

A nuclear receptor HR96-related gene underlies large trans-driven differences in detoxification gene expression in a generalist herbivore.

Meiyuan Ji, Marilou Vandenhole, Berdien De Beer, Sander De Rouck, Ernesto Villacis-Perez, René Feyereisen, Richard M Clark, Thomas Van Leeuwen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Meiyuan Ji *School of Biological Sciences, University of Utah, Salt Lake City, UT, USA.ORCID http://orcid.org/0000-0001-7344-4399
Marilou Vandenhole *Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-4654-4498
Berdien De Beer *Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0003-0495-6838
Sander De RouckDepartment of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0009-0001-6322-1121
Ernesto Villacis-PerezDepartment of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-0489-8829
René FeyereisenDepartment of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-9560-571X
Richard M ClarkSchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA. clark@biology.utah.edu.ORCID http://orcid.org/0000-0002-1470-301X
Thomas Van LeeuwenDepartment of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium. Thomas.VanLeeuwen@UGent.be.ORCID http://orcid.org/0000-0003-4651-830X
Ghent University · BEUniversity of Utah · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The role, magnitude, and molecular nature of trans-driven expression variation underlying the upregulation of detoxification genes in pesticide resistant arthropod populations has remained enigmatic. In this study, we performed expression quantitative trait locus (eQTL) mapping (n = 458) between a pesticide resistant and a susceptible strain of the generalist herbivore and crop pest Tetranychus urticae. We found that a single trans eQTL hotspot controlled large differences in the expression of a subset of genes in different detoxification gene families, as well as other genes associated with host plant use. As established by additional genetic approaches including RNAi gene knockdown, a duplicated gene with a nuclear hormone receptor HR96-related ligand-binding domain was identified as causal for the expression differences between strains. The presence of a large family of HR96-related genes in T. urticae may enable modular control of detoxification and host plant use genes, facilitating this species' known and rapid evolution to diverse pesticides and host plants.

Indexed as

ArthropodsPesticidesAnimalsGene ExpressionHerbivoryQuantitative Trait LociPesticides

Identifiers

PMID37591878
PMCPMC10435515
OpenAlexW4385966955

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.