Evidence map›Paper›PMID 37587696›Full record

ArticlePlant physiology2023

Gene duplications facilitate C4-CAM compatibility in common purslane.

Xiaoliang Wang, Xuxu Ma, Ge Yan, Lei Hua, Han Liu, Wei Huang, Zhikai Liang, Qing Chao, Julian M Hibberd, Yuannian Jiao and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Screening and Stability Validation of RT-qPCR Reference Genes inInternational journal of molecular sciences · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. The CAM lineages of planet Earth.Annals of botany · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Xiaoliang WangInstitute of Botany, Chinese Academy of Sciences, Beijing 100093, China.ORCID 0000-0002-1138-1270
Xuxu MaInstitute of Botany, Chinese Academy of Sciences, Beijing 100093, China.ORCID 0000-0002-3206-8187
Ge YanInstitute of Botany, Chinese Academy of Sciences, Beijing 100093, China.ORCID 0000-0002-3687-7117
Lei HuaDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.ORCID 0000-0002-8452-536X
Han LiuInstitute of Botany, Chinese Academy of Sciences, Beijing 100093, China.ORCID 0000-0003-0029-3459
Wei HuangNational Maize Improvement Center, China Agricultural University, Beijing 100193, China.ORCID 0000-0002-6943-5892
Zhikai LiangDepartment of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, USA.ORCID 0000-0002-9963-8631
Qing ChaoInstitute of Botany, Chinese Academy of Sciences, Beijing 100093, China.ORCID 0000-0002-5445-779X
Julian M HibberdDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.ORCID 0000-0003-0662-7958
Yuannian JiaoInstitute of Botany, Chinese Academy of Sciences, Beijing 100093, China.ORCID 0000-0002-8987-2782
Mei ZhangInstitute of Botany, Chinese Academy of Sciences, Beijing 100093, China.ORCID 0000-0001-9803-0205
Chinese Academy of Sciences · CNUniversity of Cambridge · GBChina Agricultural University · CNUniversity of Minnesota · US

Funding

Bill and Melinda Gates FoundationNational Key Research and Development Program of China 2020YFE0202300National Natural Science Foundation of China 32221001University of Oxford
6 · The paper itself

Abstract

Common purslane (Portulaca oleracea) integrates both C4 and crassulacean acid metabolism (CAM) photosynthesis pathways and is a promising model plant to explore C4-CAM plasticity. Here, we report a high-quality chromosome-level genome of nicotinamide adenine dinucleotide (NAD)-malic enzyme (ME) subtype common purslane that provides evidence for 2 rounds of whole-genome duplication (WGD) with an ancient WGD (P-β) in the common ancestor to Portulacaceae and Cactaceae around 66.30 million years ago (Mya) and another (Po-α) specific to common purslane lineage around 7.74 Mya. A larger number of gene copies encoding key enzymes/transporters involved in C4 and CAM pathways were detected in common purslane than in related species. Phylogeny, conserved functional site, and collinearity analyses revealed that the Po-α WGD produced the phosphoenolpyruvate carboxylase-encoded gene copies used for photosynthesis in common purslane, while the P-β WGD event produced 2 ancestral genes of functionally differentiated (C4- and CAM-specific) beta carbonic anhydrases involved in the C4 + CAM pathways. Additionally, cis-element enrichment analysis in the promoters showed that CAM-specific genes have recruited both evening and midnight circadian elements as well as the Abscisic acid (ABA)-independent regulatory module mediated by ethylene-response factor cis-elements. Overall, this study provides insights into the origin and evolutionary process of C4 and CAM pathways in common purslane, as well as potential targets for engineering crops by integrating C4 or CAM metabolism.

Indexed as

PortulacaBiological EvolutionCrassulacean Acid MetabolismGene DuplicationPhotosynthesisPhylogeny

Identifiers

PMID37587696
PMCPMC10663116
OpenAlexW4385897669

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.