Evidence map›Paper›PMID 37587350›Full record

ArticleCell stress & chaperones2023

Genomic loss of the HSP70cA gene in the vertebrate lineage.

Alisha Merchant, Bradly I Ramirez, Melinda N Reyes, Dysocheata Van, Marilin Martinez-Colin, Damilola O Ojo, Esmeralda L Mazuca, Heidi J De La O, Abigayle M Glenn, Claudia G Lira and 3 more

Open access · greenAbstract read
In one paragraph

Article in Cell stress & chaperones, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Alisha Merchant *College of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Bradly I Ramirez *College of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Melinda N ReyesCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Dysocheata VanCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Marilin Martinez-ColinCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Damilola O OjoCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Esmeralda L MazucaCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Heidi J De La OCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Abigayle M GlennCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Claudia G LiraCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.
Hashimul EhsanCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA.ORCID 0000-0002-4464-6765
Ermeng YuKey Laboratory of Tropical & Subtropical Fishery Resource Application & Cultivation, Pearl River Fisheries Research Institute of CAFS, Guangzhou, 510380, China. yem@prfri.ac.cn.ORCID 0000-0001-6348-9884
Gen KanekoCollege of Natural and Applied Science, University of Houston-Victoria, Victoria, TX, 77901, USA. kanekog@uhv.edu.ORCID 0000-0003-4295-5123
Texas A&M University-Victoria · USChinese Academy of Fishery Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metazoan 70 kDa heat shock protein (HSP70) genes have been classified into four lineages: cytosolic A (HSP70cA), cytosolic B (HSP70cB), endoplasmic reticulum (HSP70er), and mitochondria (HSP70m). Because previous studies have identified no HSP70cA genes in vertebrates, we hypothesized that this gene was lost on the evolutionary path to vertebrates. To test this hypothesis, the present study conducted a comprehensive database search followed by phylogenetic and synteny analyses. HSP70cA genes were found in invertebrates and in two of the three subphyla of Chordata, Cephalochordata (lancelets) and Tunicata (tunicates). However, no HSP70cA gene was found in the genomes of Craniata (another subphylum of Chordata; lamprey, hagfish, elephant shark, and coelacanth), suggesting the loss of the HSP70cA gene in the early period of vertebrate evolution. Synteny analysis using available genomic resources indicated that the synteny around the HSP70 genes was generally conserved between tunicates but was largely different between tunicates and lamprey. These results suggest the presence of dynamic chromosomal rearrangement in early vertebrates that possibly caused the loss of the HSP70cA gene in the vertebrate lineage.

Indexed as

Evolution, MolecularVertebratesAnimalsGenomeGenomicsPhylogenyChordataComparative genomicsHeat shock proteinMolecular evolutionSynteny

Identifiers

PMID37587350
PMCPMC10746604
OpenAlexW4385852800

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.