Evidence map›Paper›PMID 37587104›Full record

ArticleNature communications2023

Genome-wide association studies reveal novel loci associated with pyrethroid and organophosphate resistance in Anopheles gambiae and Anopheles coluzzii.

Eric R Lucas, Sanjay C Nagi, Alexander Egyir-Yawson, John Essandoh, Samuel Dadzie, Joseph Chabi, Luc S Djogbénou, Adandé A Medjigbodo, Constant V Edi, Guillaume K Kétoh and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
33.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 89 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 6 countries.

Eric R LucasDepartment of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK. eric.lucas@lstmed.ac.uk.ORCID http://orcid.org/0000-0003-3892-1668
Sanjay C NagiDepartment of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK.
Alexander Egyir-YawsonDepartment of Biomedical Sciences, University of Cape Coast, Cape Coast, Ghana.
John EssandohDepartment of Biomedical Sciences, University of Cape Coast, Cape Coast, Ghana.ORCID http://orcid.org/0000-0001-6864-2075
Samuel DadzieDepartment of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.ORCID http://orcid.org/0000-0002-4105-1010
Joseph ChabiDepartment of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.ORCID http://orcid.org/0000-0003-1988-5403
Luc S DjogbénouTropical Infectious Diseases Research Centre (TIDRC), Université d'Abomey-Calavi (UAC), 01 B.P. 526, Cotonou, Benin.
Adandé A MedjigbodoTropical Infectious Diseases Research Centre (TIDRC), Université d'Abomey-Calavi (UAC), 01 B.P. 526, Cotonou, Benin.
Constant V EdiCentre Suisse de Recherches Scientifiques en Côte d'Ivoire, 01 BP 1303, Abidjan, Côte d'Ivoire.
Guillaume K KétohLaboratory of Ecology and Ecotoxicology, Department of Zoology, Faculty of Sciences, Université de Lomé, 01 B.P. 1515, Lomé, Togo.
Benjamin G KoudouCentre Suisse de Recherches Scientifiques en Côte d'Ivoire, 01 BP 1303, Abidjan, Côte d'Ivoire.
Arjen E Van't HofDepartment of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK.ORCID http://orcid.org/0000-0002-8813-4227
Emily J RipponDepartment of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK.
Dimitra PipiniDepartment of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK.
Nicholas J HardingBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK.
Naomi A DyerDepartment of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK.ORCID http://orcid.org/0000-0001-8218-4605
Louise T CerdeiraDepartment of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK.
Chris S ClarksonWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Dominic P KwiatkowskiWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.ORCID http://orcid.org/0000-0002-5023-0176
Alistair MilesWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Martin J DonnellyDepartment of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK. martin.donnelly@lstmed.ac.uk.ORCID http://orcid.org/0000-0001-5218-1497
David WeetmanDepartment of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK. david.weetman@lstmed.ac.uk.
Liverpool School of Tropical Medicine · GBWellcome Sanger Institute · GBSwiss Centre for Scientific Research · CIUniversité d'Abomey-Calavi · BJUniversity of Cape Coast · GHUniversity of Ghana · GHUniversity of Lomé · TGUniversity of Oxford · GB

Funding

Genome-based diagnostics for monitoring and evaluation of insecticide resistance in Anopheles gambiaeR01AI116811 · NIAID · TMLIVERPOOL SCHOOL OF TROPICAL MEDICINE · PI Martin James Donnelly · 2016 to 2026
$4.6M
Medical Research Council MR/P02520X/1Medical Research Council MR/T001070/1NIAID NIH HHS R01 AI116811
6 · The paper itself

Abstract

Resistance to insecticides in Anopheles mosquitoes threatens the effectiveness of malaria control, but the genetics of resistance are only partially understood. We performed a large scale multi-country genome-wide association study of resistance to two widely used insecticides: deltamethrin and pirimiphos-methyl, using sequencing data from An. gambiae and An. coluzzii from ten locations in West Africa. Resistance was highly multi-genic, multi-allelic and variable between populations. While the strongest and most consistent association with deltamethrin resistance came from Cyp6aa1, this was based on several independent copy number variants (CNVs) in An. coluzzii, and on a non-CNV haplotype in An. gambiae. For pirimiphos-methyl, signals included Ace1, cytochrome P450s, glutathione S-transferases and the nAChR target site of neonicotinoid insecticides. The regions around Cyp9k1 and the Tep family of immune genes showed evidence of cross-resistance to both insecticides. These locally-varying, multi-allelic patterns highlight the challenges involved in genomic monitoring of resistance, and may form the basis for improved surveillance methods.

Indexed as

AnophelesInsecticidesPyrethrinsAnimalsGenome-Wide Association StudyNitrilesOrganophosphatesOrganothiophosphorus CompoundsdecamethrinInsecticidesNitrilesOrganophosphatesOrganothiophosphorus Compoundspirimiphos methylPyrethrins

Identifiers

PMID37587104
PMCPMC10432508
OpenAlexW4385874753

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.