Evidence map›Paper›PMID 37584588›Full record

ArticleCurrent protocols2023

Systematic Sampling of the Female Reproductive System for Molecular Characterization.

Stephen A Fisher, Marielena Grijalva, Rong Guo, Sarah A Johnston, Louise C Laurent, Hieu Nguyen, John Renz, Jean G Rosario, Steven Rudich, Brian D Gregory and 2 more

Abstract read
In one paragraph

Article in Current protocols, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Stephen A FisherDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, Pennsylvania.
Marielena GrijalvaPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Rong GuoDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, Pennsylvania.
Sarah A JohnstonPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Louise C LaurentDepartment of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, California.
Hieu NguyenDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, Pennsylvania.
John RenzGift of Life Donor Program, Philadelphia, PA.
Jean G RosarioDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, Pennsylvania.
Steven RudichGift of Life Donor Program, Philadelphia, PA.
Brian D GregoryDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, Pennsylvania.
Junhyong KimDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, Pennsylvania.
Kathleen O'NeillPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.

Funding

Penn TMC: Organ-Specific ProjectU54HD104392 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI KIM, JUNHYONG, O'NEILL, KATHLEEN ELISE · 2020 to 2024
$6.1M
Origin and Life Cycle of the Uterine Natural Killer Cell: Novel Insights from Human Uterus TransplantationR01AI145905 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI O'NEILL, KATHLEEN ELISE, PORRETT, PAIGE M · 2019 to 2023
$1.9M
NIAID NIH HHS R01 AI145905NICHD NIH HHS U54 HD104392
6 · The paper itself

Abstract

As part of the National Institutes of Health Human BioMolecular Atlas Program to develop a global platform to map the 37 trillion cells in the adult human body, we are generating a comprehensive molecular characterization of the female reproductive system. Data gathered from multiple single-cell/single-nucleus and spatial molecular assays will be used to build a 3D molecular atlas. Herein, we describe our multistep protocol, beginning with an optimized organ procurement workflow that maintains functional characteristics of the uterus, ovaries, and fallopian tubes by perfusing these organs with preservation solution. We have also developed a structured tissue sampling procedure that retains information on individual-level anatomic, physiologic, and individual diversity of the female reproductive system, toward full exploration of the function and structure of female reproductive cells. © 2023 Wiley Periodicals LLC. Basic Protocol 1: Preparation and preservation of the female reproductive system (ovaries, fallopian tubes, and uterus) prior to procurement Basic Protocol 2: Removal of the female reproductive system en bloc Basic Protocol 3: Postsurgical dissection of ovaries Basic Protocol 4: Postsurgical dissection of fallopian tubes Basic Protocol 5: Postsurgical dissection of cervix Basic Protocol 6: Postsurgical dissection of uterine body Support Protocol 1: OCT-embedded tissue protocol Support Protocol 2: Tissue fixation protocol Support Protocol 3: Snap-frozen tissue protocol Basic Protocol 7: Tissue slice preparation for Visium analysis Support Protocol 4: Hematoxylin and eosin staining for 10X Visium imaging Basic Protocol 8: Manual tissue dissociation for Multiome analysis Basic Protocol 9: Tissue dissociation for Multiome analysis using S2 Singulator.

Indexed as

Genitalia, FemaleUterusAdultCervix UteriFallopian TubesFemaleHumansOvaryUnited StatesATACseqfemale reproductive systemRNAseqVisium

Identifiers

PMID37584588
PMCPMC10575691

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.