Evidence map›Paper›PMID 37583489›Full record

ArticleProceedings of the conference. Association for Computational Linguistics. Meeting2023

Overview of the Problem List Summarization (ProbSum) 2023 Shared Task on Summarizing Patients' Active Diagnoses and Problems from Electronic Health Record Progress Notes.

Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M Churpek, Majid Afshar

Abstract read
In one paragraph

Article in Proceedings of the conference. Association for Computational Linguistics. Meeting, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. LogosKG: Hardware-Optimized Scalable and Interpretable Knowledge Graph Retrieval.Proceedings of the conference. Association for Computational Linguistics. Meeting · 2026
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  2. Article
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  4. Large Language Models with Temporal Reasoning for Longitudinal Clinical Summarization and Prediction.Findings of ACL. EMNLP. Conference on Empirical Methods in Natural Language Processing · 2025
    Article
  5. Article
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  11. Pre-test Prediction of Non-ischemic Cardiomyopathies using Time-Series EHR Data.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2024
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yanjun GaoUniversity of Wisconsin.
Dmitriy DligachLoyola University Chicago.
Timothy MillerBoston Children's Hospital and Harvard Medical School.
Matthew M ChurpekUniversity of Wisconsin.
Majid AfsharUniversity of Wisconsin.

Funding

Temporal relation discovery for clinical textR01LM010090 · NLM · BOSTON CHILDREN'S HOSPITAL · PI MARTIN, JAMES H., SAVOVA, GUERGANA K. · 2010 to 2022
$7.1M
Data Driven Strategies for Substance Misuse Identification in Hospitalized PatientsR01DA051464 · NIDA · UNIVERSITY OF WISCONSIN-MADISON · PI Majid Afshar · 2020 to 2026
$4.5M
Learning Universal Patient Representations with Hierarchical TransformersR01LM012973 · NLM · BOSTON CHILDREN'S HOSPITAL · PI Timothy A Miller · 2019 to 2026
$3.5M
Using causal machine learning for personalized treatment recommendations in critically ill patientsR01HL157262 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Matthew Michael Churpek · 2021 to 2026
$3.1M
Sepsis Early Prediction and Subphenotype Illumination Study (SEPSIS)R35GM145330 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Matthew Michael Churpek · 2022 to 2026
$1.9M
Automated domain adaptation for clinical natural language processingR01LM012918 · NLM · BOSTON CHILDREN'S HOSPITAL · PI MILLER, TIMOTHY A · 2018 to 2020
$1.2M
NHLBI NIH HHS R01 HL157262NIDA NIH HHS R01 DA051464NIGMS NIH HHS R35 GM145330NLM NIH HHS R01 LM010090NLM NIH HHS R01 LM012918NLM NIH HHS R01 LM012973
6 · The paper itself

Abstract

The BioNLP Workshop 2023 initiated the launch of a shared task on Problem List Summarization (ProbSum) in January 2023. The aim of this shared task is to attract future research efforts in building NLP models for real-world diagnostic decision support applications, where a system generating relevant and accurate diagnoses will augment the healthcare providers' decision-making process and improve the quality of care for patients. The goal for participants is to develop models that generated a list of diagnoses and problems using input from the daily care notes collected from the hospitalization of critically ill patients. Eight teams submitted their final systems to the shared task leaderboard. In this paper, we describe the tasks, datasets, evaluation metrics, and baseline systems. Additionally, the techniques and results of the evaluation of the different approaches tried by the participating teams are summarized.

Identifiers

PMID37583489
PMCPMC10426335

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.