Evidence map›Paper›PMID 37582658›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2023

Pre-rRNA Facilitates TopBP1-Mediated DNA Double-Strand Break Response.

Di Xin, Xiaochen Gai, Yidi Ma, Zexing Li, Qilin Li, Xiaochun Yu

Open access · goldAbstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Pre-rRNA Facilitates TopBP1-Mediated DNA Double-Strand Break Response.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Di XinSchool of Life Sciences, Westlake University, Hangzhou, Zhejiang, 310024, China.
Xiaochen GaiSchool of Life Sciences, Westlake University, Hangzhou, Zhejiang, 310024, China.
Yidi MaSchool of Life Sciences, Westlake University, Hangzhou, Zhejiang, 310024, China.
Zexing LiSchool of Life Sciences, Tianjin University, Tianjin, 300072, China.
Qilin LiSchool of Life Sciences, Westlake University, Hangzhou, Zhejiang, 310024, China.
Xiaochun YuSchool of Life Sciences, Westlake University, Hangzhou, Zhejiang, 310024, China.ORCID 0000-0001-9840-2670
Westlake University · CNTianjin University · CN

Funding

National Natural Science Foundation of China 32090034National Natural Science Foundation of China 81874160
6 · The paper itself

Abstract

In response to genotoxic stress-induced DNA damage, TopBP1 mediates ATR activation for signaling transduction and DNA damage repair. However, the detailed molecular mechanism remains elusive. Here, using unbiased protein affinity purification and RNA sequencing, it is found that TopBP1 is associated with pre-ribosomal RNA (pre-rRNA). Pre-rRNA co-localized with TopBP1 at DNA double-strand breaks (DSBs). Similar to pre-rRNA, ribosomal proteins also colocalize with TopBP1 at DSBs. The recruitment of TopBP1 to DSBs is suppressed when cells are transiently treated with RNA polymerase I inhibitor (Pol I-i) to suppress pre-rRNA biogenesis but not protein translation. Moreover, the BRCT4-5 of TopBP1 recognizes pre-rRNA and forms liquid-liquid phase separation (LLPS) with pre-rRNA, which may be the molecular basis of DSB-induced foci of TopBP1. Finally, Pol I-i treatment impairs TopBP1-associated cell cycle checkpoint activation and homologous recombination repair. Collectively, this study reveals that pre-rRNA plays a key role in the TopBP1-dependent DNA damage response.

Indexed as

DNA Breaks, Double-StrandedRNA PrecursorsAtaxia Telangiectasia Mutated ProteinsCarrier ProteinsCell Cycle ProteinsDNADNA-Binding ProteinsNuclear ProteinsAtaxia Telangiectasia Mutated ProteinsCarrier ProteinsCell Cycle ProteinsDNADNA-Binding ProteinsNuclear ProteinsRNA PrecursorsATR activationDNA damage responsepre-ribosomal RNATopBP1

Identifiers

PMID37582658
PMCPMC10558638
OpenAlexW4385850717

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.