Evidence map›Paper›PMID 37580676›Full record

ArticleBMC infectious diseases2023

Genotype diversity of brucellosis agents isolated from humans and animals in Greece based on whole-genome sequencing.

Hanka Brangsch, Vassilios Sandalakis, Maria Babetsa, Evridiki Boukouvala, Artemisia Ntoula, Eirini Makridaki, Athanasia Christidou, Anna Psaroulaki, Kadir Akar, Sevil Erdenlig Gürbilek and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Whole-Genome Sequencing of Brucella melitensis Isolates from Kuwait for the Identification of Biovars, Variants, and Relationship within a Biovar.Medical principles and practice : international journal of the Kuwait University, Health Science Centre · 2025
    Article
  9. The European Union One Health 2023 Zoonoses report.EFSA journal. European Food Safety Authority · 2024
    Article
  10. Article
  11. Genomic analysis ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2024
    Article
  12. Article
  13. Combination ofFrontiers in microbiology · 2024
    Article
  14. Detection of Virulence-Associated Genes amongPathogens (Basel, Switzerland) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Hanka Brangsch *Institute of Bacterial Infections and Zoonoses, Fredrich-Loeffler-Institut - Federal Research Institute for Animal Health (FLI), 07743, Jena, Germany. hanka.brangsch@fli.de.
Vassilios Sandalakis *Laboratory of Clinical Microbiology and Microbial Pathogenesis, School of Medicine, University of Crete, Heraklion, Crete, 71500, Greece.
Maria BabetsaVeterinary Research Institute, ELGO-DIMITRA, Campus of Thermi, Thermi, 57001, Thessaloniki, Greece.
Evridiki BoukouvalaVeterinary Research Institute, ELGO-DIMITRA, Campus of Thermi, Thermi, 57001, Thessaloniki, Greece.
Artemisia NtoulaLaboratory of Clinical Microbiology and Microbial Pathogenesis, School of Medicine, University of Crete, Heraklion, Crete, 71500, Greece.
Eirini MakridakiLaboratory of Clinical Microbiology and Microbial Pathogenesis, School of Medicine, University of Crete, Heraklion, Crete, 71500, Greece.
Athanasia ChristidouLaboratory of Clinical Microbiology and Microbial Pathogenesis, School of Medicine, University of Crete, Heraklion, Crete, 71500, Greece.
Anna PsaroulakiLaboratory of Clinical Microbiology and Microbial Pathogenesis, School of Medicine, University of Crete, Heraklion, Crete, 71500, Greece.
Kadir AkarFaculty of Veterinary Medicine, Van Yuzuncu Yıl University, Van, 65090, Turkey.
Sevil Erdenlig GürbilekMicrobiology Department, Faculty of Veterinary Medicine, Harran University, Şanlıurfa, 63200, Turkey.
Tariq JamilInstitute of Bacterial Infections and Zoonoses, Fredrich-Loeffler-Institut - Federal Research Institute for Animal Health (FLI), 07743, Jena, Germany.
Falk MelzerInstitute of Bacterial Infections and Zoonoses, Fredrich-Loeffler-Institut - Federal Research Institute for Animal Health (FLI), 07743, Jena, Germany.
Heinrich NeubauerInstitute of Bacterial Infections and Zoonoses, Fredrich-Loeffler-Institut - Federal Research Institute for Animal Health (FLI), 07743, Jena, Germany.
Gamal WarethInstitute of Bacterial Infections and Zoonoses, Fredrich-Loeffler-Institut - Federal Research Institute for Animal Health (FLI), 07743, Jena, Germany.
University of Crete · GRFriedrich-Loeffler-Institut · DECentre for Research and Technology Hellas · GRHarran University · TRJena University Hospital · DEVan Yüzüncü Yıl Üniversitesi · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBrucellosis is a zoonotic disease whose causative agent, Brucella spp., is endemic in many countries of the Mediterranean basin, including Greece. Although the occurrence of brucellosis must be reported to the authorities, it is believed that the disease is under-reported in Greece, and knowledge about the genomic diversity of brucellae is lacking.

methodsThus, 44 Brucella isolates, primarily B. melitensis, collected between 1999 and 2009 from humans and small ruminants in Greece were subjected to whole genome sequencing using short-read technology. The raw reads and assembled genomes were used for in silico genotyping based on single nucleotide substitutions and alleles. Further, specific genomic regions encoding putative virulence genes were screened for characteristic nucleotide changes, which arose in different genotype lineages.

resultsIn silico genotyping revealed that the isolates belonged to three of the known sublineages of the East Mediterranean genotype. In addition, a novel subgenotype was identified that was basal to the other East Mediterranean sublineages, comprising two Greek strains. The majority of the isolates can be assumed to be of endemic origin, as they were clustered with strains from the Western Balkans or Turkey, whereas one strain of human origin could be associated with travel to another endemic region, e.g. Portugal. Further, nucleotide substitutions in the housekeeping gene rpoB and virulence-associated genes were detected, which were characteristic of the different subgenotypes. One of the isolates originating from an aborted bovine foetus was identified as B. abortus vaccine strain RB51.

conclusionThe results demonstrate the existence of several distinct persistent Brucella sp. foci in Greece. To detect these and for tracing infection chains, extensive sampling initiatives are required.

Indexed as

Brucella melitensisBrucellosisAnimalsCattleGenotypeGreeceHumansMultilocus Sequence TypingPhylogenyWhole Genome SequencingBrucella abortus RB51Brucella melitensisBrucellosiscgMLSTcgSNPEast Mediterranean lineageGreeceVirulence genes

Identifiers

PMID37580676
PMCPMC10426126
OpenAlexW4385806774

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.