Evidence map›Paper›PMID 37580540›Full record

ArticleNature metabolism2023

Metabolic profiling stratifies colorectal cancer and reveals adenosylhomocysteinase as a therapeutic target.

Johan Vande Voorde, Rory T Steven, Arafath K Najumudeen, Catriona A Ford, Alex Dexter, Ariadna Gonzalez-Fernandez, Chelsea J Nikula, Yuchen Xiang, Lauren Ford, Stefania Maneta Stavrakaki and 44 more

Open access · hybridAbstract read
In one paragraph

Article in Nature metabolism, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 52 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

54 authors at 10 institutions in 3 countries.

Johan Vande VoordeCancer Research UK Beatson Institute, Glasgow, UK. j.vandevoorde@beatson.gla.ac.uk.ORCID http://orcid.org/0000-0002-7686-0926
Rory T StevenNational Physical Laboratory, London, UK.ORCID http://orcid.org/0000-0002-6754-2424
Arafath K NajumudeenCancer Research UK Beatson Institute, Glasgow, UK.ORCID http://orcid.org/0000-0002-3764-5721
Catriona A FordCancer Research UK Beatson Institute, Glasgow, UK.ORCID http://orcid.org/0000-0003-3991-6369
Alex DexterNational Physical Laboratory, London, UK.ORCID http://orcid.org/0000-0001-8536-4417
Ariadna Gonzalez-FernandezNational Physical Laboratory, London, UK.ORCID http://orcid.org/0009-0003-3225-4718
Chelsea J NikulaNational Physical Laboratory, London, UK.ORCID http://orcid.org/0000-0002-6817-2592
Yuchen XiangDepartment of Metabolism Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-7758-9402
Lauren FordDepartment of Metabolism Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, UK.ORCID http://orcid.org/0000-0003-2350-8678
Stefania Maneta StavrakakiDepartment of Metabolism Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-4621-4704
Kathryn GilroyCancer Research UK Beatson Institute, Glasgow, UK.ORCID http://orcid.org/0000-0003-4607-194X
Lucas B ZeigerCancer Research UK Beatson Institute, Glasgow, UK.ORCID http://orcid.org/0000-0002-8712-3112
Kathryn PennelSchool of Cancer Sciences, University of Glasgow, Glasgow, UK.
Phimmada HatthakarnkulSchool of Cancer Sciences, University of Glasgow, Glasgow, UK.
Efstathios A EliaNational Physical Laboratory, London, UK.ORCID http://orcid.org/0000-0003-2769-7066
Ammar NasifNational Physical Laboratory, London, UK.ORCID http://orcid.org/0000-0002-4923-5463
Teresa MurtaNational Physical Laboratory, London, UK.
Eftychios ManoliDepartment of Metabolism Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, UK.
Sam MasonDepartment of Metabolism Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, UK.
Michael GillespieCancer Research UK Beatson Institute, Glasgow, UK.
Tamsin R M LannaganCancer Research UK Beatson Institute, Glasgow, UK.
Nikola VlahovCancer Research UK Beatson Institute, Glasgow, UK.
Rachel A RidgwayCancer Research UK Beatson Institute, Glasgow, UK.ORCID http://orcid.org/0000-0003-0198-8244
Colin NixonCancer Research UK Beatson Institute, Glasgow, UK.ORCID http://orcid.org/0000-0002-8085-2160
Alexander RavenCancer Research UK Beatson Institute, Glasgow, UK.
Megan MillsCancer Research UK Beatson Institute, Glasgow, UK.
Dimitris AthineosCancer Research UK Beatson Institute, Glasgow, UK.ORCID http://orcid.org/0000-0001-5298-7941
Georgios KanellosCancer Research UK Beatson Institute, Glasgow, UK.
Craig NourseSchool of Cancer Sciences, University of Glasgow, Glasgow, UK.
David M GayCancer Research UK Beatson Institute, Glasgow, UK.
Mark HughesCancer Research UK Beatson Institute, Glasgow, UK.
Amy BurtonNational Physical Laboratory, London, UK.ORCID http://orcid.org/0000-0002-6970-1492
Bin YanNational Physical Laboratory, London, UK.ORCID http://orcid.org/0000-0002-7562-9562
Katherine SellersThe Francis Crick Institute, London, UK.
Vincen WuDepartment of Metabolism Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, UK.
Kobe De RidderDepartment of Human Genetics, University of Leuven, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0001-7343-8642
Engy ShokryCancer Research UK Beatson Institute, Glasgow, UK.
Alejandro Huerta UribeCancer Research UK Beatson Institute, Glasgow, UK.
William ClarkCancer Research UK Beatson Institute, Glasgow, UK.
Graeme ClarkCancer Research UK Beatson Institute, Glasgow, UK.
Kristina KirschnerSchool of Cancer Sciences, University of Glasgow, Glasgow, UK.ORCID http://orcid.org/0000-0001-7607-8670
Bernard ThienpontDepartment of Human Genetics, University of Leuven, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-8772-6845
Vivian S W LiThe Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0003-2041-0085
Oliver D K MaddocksSchool of Cancer Sciences, University of Glasgow, Glasgow, UK.ORCID http://orcid.org/0000-0002-5551-9091
Simon T BarryBioscience, Early Oncology, AstraZeneca, Cambridge, UK.ORCID http://orcid.org/0000-0002-8511-0588
Richard J A GoodwinImaging and Data Analytics, Clinical Pharmacology and Safety Sciences, R&D, AstraZeneca, Cambridge, UK.ORCID http://orcid.org/0000-0001-5699-8488
James KinrossDepartment of Metabolism Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-0427-7643
Joanne EdwardsSchool of Cancer Sciences, University of Glasgow, Glasgow, UK.ORCID http://orcid.org/0000-0002-7192-6906
Mariia O YunevaThe Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0003-3455-9374
David SumptonCancer Research UK Beatson Institute, Glasgow, UK.ORCID http://orcid.org/0000-0002-9004-4079
Zoltan TakatsDepartment of Metabolism Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-0795-3467
Andrew D CampbellCancer Research UK Beatson Institute, Glasgow, UK.ORCID http://orcid.org/0000-0003-3930-1276
Josephine BunchNational Physical Laboratory, London, UK.
Owen J SansomCancer Research UK Beatson Institute, Glasgow, UK. o.sansom@beatson.gla.ac.uk.ORCID http://orcid.org/0000-0001-9540-3010
Cancer Research UK Scotland Institute · GBNational Physical Laboratory · GBImperial College London · GBUniversity of Glasgow · GBThe Francis Crick Institute · GBAstraZeneca (United Kingdom) · GBKU Leuven · BEBeatson West of Scotland Cancer Centre · GBRosalind Franklin Institute · GBUniversity of Copenhagen · DK

Funding

Cancer Research UK A19702Cancer Research UK A21139Cancer Research UK A25045Cancer Research UK A29799Cancer Research UK FC001223Wellcome Trust CC2141Wellcome Trust FC001223
6 · The paper itself

Abstract

The genomic landscape of colorectal cancer (CRC) is shaped by inactivating mutations in tumour suppressors such as APC, and oncogenic mutations such as mutant KRAS. Here we used genetically engineered mouse models, and multimodal mass spectrometry-based metabolomics to study the impact of common genetic drivers of CRC on the metabolic landscape of the intestine. We show that untargeted metabolic profiling can be applied to stratify intestinal tissues according to underlying genetic alterations, and use mass spectrometry imaging to identify tumour, stromal and normal adjacent tissues. By identifying ions that drive variation between normal and transformed tissues, we found dysregulation of the methionine cycle to be a hallmark of APC-deficient CRC. Loss of Apc in the mouse intestine was found to be sufficient to drive expression of one of its enzymes, adenosylhomocysteinase (AHCY), which was also found to be transcriptionally upregulated in human CRC. Targeting of AHCY function impaired growth of APC-deficient organoids in vitro, and prevented the characteristic hyperproliferative/crypt progenitor phenotype driven by acute deletion of Apc in vivo, even in the context of mutant Kras. Finally, pharmacological inhibition of AHCY reduced intestinal tumour burden in Apc

Indexed as

Colorectal NeoplasmsAdenosylhomocysteinaseAnimalsHumansMetabolomicsMiceMutationProto-Oncogene Proteins p21(ras)AdenosylhomocysteinaseAHCY protein, humanAhcy protein, mouseProto-Oncogene Proteins p21(ras)

Identifiers

PMID37580540
PMCPMC10447251
OpenAlexW4385827399

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.