Evidence map›Paper›PMID 37578459›Full record

ArticleAnalytical chemistry2023

Normalized Multipotential Redox Coding of DNA Bases for Determination of Total Nucleotide Composition.

David Kodr, Mayreli Ortiz, Veronika Sýkorová, Cansu Pinar Yenice, Zbigniew J Lesnikowski, Ciara K O'Sullivan, Michal Hocek

Open access · hybridAbstract read
In one paragraph

Article in Analytical chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

David KodrInstitute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo namesti 2, CZ-16000 Prague 6, Czech Republic.ORCID 0000-0002-5948-6426
Mayreli OrtizDepartament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007 Tarragona, Spain.ORCID 0000-0002-9423-0055
Veronika SýkorováInstitute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo namesti 2, CZ-16000 Prague 6, Czech Republic.
Cansu Pinar YeniceDepartament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007 Tarragona, Spain.ORCID 0000-0002-5445-306X
Zbigniew J LesnikowskiLaboratory of Medicinal Chemistry, Institute of Medical Biology PAS, Lodowa 106, 92-232 Łódź, Poland.ORCID 0000-0003-3158-5796
Ciara K O'SullivanDepartament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007 Tarragona, Spain.ORCID 0000-0003-2603-2230
Michal HocekInstitute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo namesti 2, CZ-16000 Prague 6, Czech Republic.ORCID 0000-0002-1113-2047
Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZUniversitat Rovira i Virgili · ESCharles University · CZInstitució Catalana de Recerca i Estudis Avançats · ESInstitute for Medical Biology · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The previously reported approach of orthogonal multipotential redox coding of all four DNA bases allowed only analysis of the relative nucleotide composition of short DNA stretches. Here, we present two methods for normalization of the electrochemical readout to facilitate the determination of the total nucleotide composition. The first method is based on the presence or absence of an internal standard of 7-deaza-2'-deoxyguanosine in a DNA primer. The exact composition of the DNA was elucidated upon two parallel analyses and the subtraction of the electrochemical signal intensities. The second approach took advantage of a 5'-viologen modified primer, with this fifth orthogonal redox label acting as a reference for signal normalization, thus allowing accurate electrochemical sequence analysis in a single read. Both approaches were tested using various sequences, and the voltammetric signals obtained were normalized using either the internal standard or the reference label and demonstrated to be in perfect agreement with the actual nucleotide composition, highlighting the potential for targeted DNA sequence analysis.

Indexed as

DNANucleotidesDNA PrimersOxidation-ReductionDNADNA PrimersNucleotides

Identifiers

PMID37578459
PMCPMC10469368
OpenAlexW4385797865

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.