Evidence map›Paper›PMID 37577371›Full record

ArticleFrontiers in cellular and infection microbiology2023

Preliminary landscape of

Sabrina Naud, Camille Valles, Abdourahim Abdillah, Linda Abou Chacra, Fatima Zouina Mekhalif, Ahmad Ibrahim, Aurelia Caputo, Jean-Pierre Baudoin, Frédérique Gouriet, Fadi Bittar and 5 more

Abstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Leveraging FracMinHash Containment for GenomicbioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sabrina NaudAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Camille VallesAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Abdourahim AbdillahAix Marseille Université, IRD, AP-HM, SSA, VITROME, IHU Méditerranée Infection Marseille, France.
Linda Abou ChacraAix Marseille Université, IRD, AP-HM, SSA, VITROME, IHU Méditerranée Infection Marseille, France.
Fatima Zouina MekhalifAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Ahmad IbrahimAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Aurelia CaputoAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Jean-Pierre BaudoinAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Frédérique GourietAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Fadi BittarAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Jean-Christophe LagierAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Stéphane RanqueAix Marseille Université, IRD, AP-HM, SSA, VITROME, IHU Méditerranée Infection Marseille, France.
Florence FenollarAix Marseille Université, IRD, AP-HM, SSA, VITROME, IHU Méditerranée Infection Marseille, France.
Maryam Tidjani AlouAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.
Didier RaoultAix-Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, Marseille, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Candidate Phyla Radiation (CPR) and more specifically Candidatus Saccharibacteria (TM7) have now been established as ubiquitous members of the human oral microbiota. Additionally, CPR have been reported in the gastrointestinal and urogenital tracts. However, the exploration of new human niches has been limited to date. Methods: In this study, we performed a prospective and retrospective screening of TM7 in human samples using standard PCR, real-time PCR, scanning electron microscopy (SEM) and shotgun metagenomics. Results: Using Real-time PCR and standard PCR, oral samples presented the highest TM7 prevalence followed by fecal samples, breast milk samples, vaginal samples and urine samples. Surprisingly, TM7 were also detected in infectious samples, namely cardiac valves and blood cultures at a low prevalence (under 3%). Moreover, we observed CPR-like structures using SEM in all sample types except cardiac valves. The reconstruction of TM7 genomes in oral and fecal samples from shotgun metagenomics reads further confirmed their high prevalence in some samples. Conclusion: This study confirmed, through their detection in multiple human samples, that TM7 are human commensals that can also be found in clinical settings. Their detection in clinical samples warrants further studies to explore their role in a pathological setting.

Indexed as

BacteriaMicrobiotaFemaleHumansProspective StudiesReal-Time Polymerase Chain ReactionRetrospective StudiesCandidate Phyla RadiationCandidatus Saccharibacteriaelectron microscopyhuman microbiomemolecular detection

Identifiers

PMID37577371
PMCPMC10414567

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.