Evidence map›Paper›PMID 37576929›Full record

ArticleInternational journal of computer vision2023

OpenMonkeyChallenge: Dataset and Benchmark Challenges for Pose Estimation of Non-human Primates.

Yuan Yao, Praneet Bala, Abhiraj Mohan, Eliza Bliss-Moreau, Kristine Coleman, Sienna M Freeman, Christopher J Machado, Jessica Raper, Jan Zimmermann, Benjamin Y Hayden and 1 more

Abstract read
In one paragraph

Article in International journal of computer vision, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. A framework for quantifying the mechanics of dexterous grasp.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. From Forest to Zoo: Great Ape Behavior Recognition with ChimpBehave.International journal of computer vision · 2025
    Article
  7. Review
  8. Article
  9. Automated pose estimation in primates.American journal of primatology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yuan YaoComputer Science and Engineering, University of Minnesota, Minneapolis, USA.
Praneet BalaComputer Science and Engineering, University of Minnesota, Minneapolis, USA.ORCID 0000-0002-2144-1986
Abhiraj MohanComputer Science and Engineering, University of Minnesota, Minneapolis, USA.
Eliza Bliss-MoreauCalifornia National Primate Research Center, Davis, USA.
Kristine ColemanOregon National Primate Research Center, Beaverton, USA.
Sienna M FreemanEmory National Primate Research Center, Atlanta, USA.
Christopher J MachadoCalifornia National Primate Research Center, Davis, USA.
Jessica RaperEmory National Primate Research Center, Atlanta, USA.
Jan ZimmermannNeuroscience, University of Minnesota, Minneapolis, USA.
Benjamin Y HaydenNeuroscience, University of Minnesota, Minneapolis, USA.
Hyun Soo ParkComputer Science and Engineering, University of Minnesota, Minneapolis, USA.

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
Neurodevelopment after postnatal Zika virus infection in infant macaquesR01NS120182 · NINDS · EMORY UNIVERSITY · PI CHAHROUDI, ANN M, RAPER, JESSICA · 2021 to 2025
$3.7M
Functional Neuroimaging of the Social BrainK99MH083883 · NIMH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MACHADO, CHRISTOPHER J · 2008 to 2009
$180k
NIH HHS P51 OD011092NIH HHS P51 OD011132NIMH NIH HHS K99 MH083883NINDS NIH HHS R01 NS120182
6 · The paper itself

Abstract

The ability to automatically estimate the pose of non-human primates as they move through the world is important for several subfields in biology and biomedicine. Inspired by the recent success of computer vision models enabled by benchmark challenges (e.g., object detection), we propose a new benchmark challenge called OpenMonkeyChallenge that facilitates collective community efforts through an annual competition to build generalizable non-human primate pose estimation models. To host the benchmark challenge, we provide a new public dataset consisting of 111,529 annotated (17 body landmarks) photographs of non-human primates in naturalistic contexts obtained from various sources including the Internet, three National Primate Research Centers, and the Minnesota Zoo. Such annotated datasets will be used for the training and testing datasets to develop generalizable models with standardized evaluation metrics. We demonstrate the effectiveness of our dataset quantitatively by comparing it with existing datasets based on seven state-of-the-art pose estimation models.

Indexed as

Behavioral trackingDataset and benchmark challengeDeep learningNon-human primates

Identifiers

PMID37576929
PMCPMC10414782

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.