Evidence map›Paper›PMID 37574751›Full record

ArticleProtein science : a publication of the Protein Society2023

Reevaluation of bromodomain ligands targeting BAZ2A.

Giulia Cazzanelli, Andrea Dalle Vedove, Eleonora Parolin, Vito Giuseppe D'Agostino, Andrea Unzue, Cristina Nevado, Amedeo Caflisch, Graziano Lolli

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 3 citations in OpenAlex.

  1. Unusual backfolded binding poses of BAZ2A bromodomain binders.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Review
  3. Article
  4. Enhanced cellular death in liver and breast cancer cells by dual BET/BRPF1 inhibitors.Protein science : a publication of the Protein Society · 2024
    Article
  5. Reevaluation of bromodomain ligands targeting BAZ2A.Protein science : a publication of the Protein Society · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Giulia CazzanelliDepartment of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, Trento, Italy.
Andrea Dalle VedoveDepartment of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, Trento, Italy.
Eleonora ParolinDepartment of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, Trento, Italy.
Vito Giuseppe D'AgostinoDepartment of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, Trento, Italy.
Andrea UnzueDepartment of Chemistry, University of Zürich, Zürich, Switzerland.
Cristina NevadoDepartment of Chemistry, University of Zürich, Zürich, Switzerland.
Amedeo CaflischDepartment of Biochemistry, University of Zürich, Zürich, Switzerland.
Graziano LolliDepartment of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, Trento, Italy.ORCID 0000-0002-8536-5599
University of Trento · ITUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BAZ2A promotes migration and invasion in prostate cancer. Two chemical probes, the specific BAZ2-ICR, and the BAZ2/BRD9 cross-reactive GSK2801, interfere with the recognition of acetylated lysines in histones by the bromodomains of BAZ2A and of its BAZ2B paralog. The two chemical probes were tested in prostate cancer cell lines with opposite androgen susceptibility. BAZ2-ICR and GSK2801 showed different cellular efficacies in accordance with their unequal selectivity profiles. Concurrent inhibition of BAZ2 and BRD9 did not reproduce the effects observed with GSK2801, indicating possible off-targets for this chemical probe. On the other hand, the single BAZ2 inhibition by BAZ2-ICR did not phenocopy genetic ablation, demonstrating that bromodomain interference is not sufficient to strongly affect BAZ2A functionality and suggesting a PROTAC-based chemical ablation as an alternative optimization strategy and a possible therapeutic approach. In this context, we also present the crystallographic structures of BAZ2A in complex with the above chemical probes. Binding poses of TP-238 and GSK4027, chemical probes for the bromodomain subfamily I, and two ligands of the CBP/EP300 bromodomains identify additional headgroups for the development of BAZ2A ligands.

Indexed as

IndolizinesProstatic NeoplasmsTranscription Factors, GeneralBromodomain Containing ProteinsChromosomal Proteins, Non-HistoneHumansLigandsMaleSulfonesTranscription Factors1-(1-(3-(methylsulfonyl)phenyl)-7-propoxyindolizin-3-yl)ethanoneBAZ2A protein, humanBAZ2B protein, humanBRD9 protein, humanBromodomain Containing ProteinsChromosomal Proteins, Non-HistoneIndolizinesLigandsSulfonesTranscription FactorsTranscription Factors, GeneralBAZ2 bromodomainprostate cancerprotein crystallographysmall molecule inhibitors

Identifiers

PMID37574751
PMCPMC10464297
OpenAlexW4385799313

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.