Evidence map›Paper›PMID 37574473›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

In Vitro Assay to Measure APE1 Enzymatic Activity on Ribose Monophosphate Abasic Site.

Matilde Clarissa Malfatti, Giulia Antoniali, Gianluca Tell

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Matilde Clarissa MalfattiLaboratory of Molecular Biology and DNA repair, Department of Medicine (DAME), University of Udine, Udine, Italy.ORCID 0000-0002-8101-568X
Giulia AntonialiLaboratory of Molecular Biology and DNA repair, Department of Medicine (DAME), University of Udine, Udine, Italy.ORCID 0000-0002-2639-1893
Gianluca TellLaboratory of Molecular Biology and DNA repair, Department of Medicine (DAME), University of Udine, Udine, Italy. gianluca.tell@uniud.it.ORCID 0000-0001-8845-6448
University of Udine · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

APE1 (apurinic/apyrimidinic endodeoxyribonuclease 1) is a central enzyme of the base excision repair (BER) pathway playing a pivotal role in protecting mammalian cells against genotoxins and in safeguarding genome stability. Recently, we demonstrated the APE1 ability to process abasic ribonucleotides embedded in DNA. Here, we provide a pipeline of protocols to quantify endodeoxyribonuclease activity by APE1 on these substrates, by using recombinant protein and whole-cell extracts. The repair capacity is measured by using fluorescent oligonucleotide substrates, which are then separated by polyacrylamide gel electrophoresis and detected by imaging scanning. The specificity of APE1 action is demonstrated using specific APE1 enzymatic inhibitors.

Indexed as

DNA-(Apurinic or Apyrimidinic Site) LyaseEnzyme AssaysDNA RepairIn Vitro TechniquesRiboseDNA-(Apurinic or Apyrimidinic Site) LyaseRiboseApurinic/apyrimidinic endodeoxyribonuclease 1Base excision repairEnzymatic activityInhibitor IIIRibose monophosphate abasic siteRNA

Identifiers

PMID37574473
OpenAlexW4385790109

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.