Evidence map›Paper›PMID 37574063›Full record

ArticleThe Science of the total environment2023

Enhanced detection of mpox virus in wastewater using a pre-amplification approach: A pilot study informing population-level monitoring of low-titer pathogens.

Devin A Bowes, Katherine B Henke, Erin M Driver, Melanie Engstrom Newell, Izabella Block, Gray Shaffer, Arvind Varsani, Matthew Scotch, Rolf U Halden

Open access · hybridAbstract read
In one paragraph

Article in The Science of the total environment, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Devin A BowesThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA.
Katherine B HenkeThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA.
Erin M DriverThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA.
Melanie Engstrom NewellThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA.
Izabella BlockThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA.
Gray ShafferThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA.
Arvind VarsaniThe Biodesign Institute Center for Fundamental and Applied Microbiomics, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA; School of Life Sciences, Arizona State University, 427 E. Tyler Mall, Tempe, AZ 85281, USA; Center of Evolution and Medicine, Arizona State University, 427 E. Tyler Mall, Tempe, AZ 85281, USA.
Matthew ScotchThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA; College of Health Solutions, Arizona State University, 550 N. 3rd St., Phoenix, AZ 85004, USA.
Rolf U HaldenThe Biodesign Institute Center for Environmental Health Engineering, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA; School for Sustainable Engineering and the Built Environment, Arizona State University, 660 S. College Ave., Tempe, AZ 85281, USA; OneWaterOneHealth, The Arizona State University Foundation, The Biodesign Institute, Arizona State University, 1001 S. McAllister Ave., Tempe, AZ 85281, USA; Global Futures Laboratory, Arizona State University, 800 S. Cady Mall, Tempe, AZ 85281, USA. Electronic address: rolf.halden@asu.edu.
Center for Environmental Health · USArizona State University · US

Funding

Bioinformatics Framework for Wastewater-based Surveillance of Infectious DiseasesU01LM013129 · NLM · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI HALDEN, ROLF U, SCOTCH, MATTHEW · 2020 to 2022
$3.3M
Bioinformatics Framework for Wastewater-based Surveillance of Infectious DiseasesR01LM013129 · NLM · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI HALDEN, ROLF U, SCOTCH, MATTHEW · 2019 to 2019
$395k
NLM NIH HHS R01 LM013129NLM NIH HHS U01 LM013129
6 · The paper itself

Abstract

A recent outbreak of the mpox virus (MPXV) occurred in non-endemic regions of the world beginning in May 2022. Pathogen surveillance systems faced pressure to quickly establish response protocols, offering an opportunity to employ wastewater-based epidemiology (WBE) for population-level monitoring. The pilot study reported herein aimed to: (i) develop a reliable protocol for MPXV DNA detection in wastewater which would reduce false negative reporting, (ii) test this protocol on wastewater from various regions across the United States, and (iii) conduct a state of the science review of the current literature reporting on experimental methods for MPXV detection using WBE. Twenty-four-hour composite samples of untreated municipal wastewater were collected from the states of New Jersey, Georgia, Illinois, Texas, Arizona, and Washington beginning July 3rd, 2022 through October 16th, 2022 (n = 60). Samples underwent vacuum filtration, DNA extraction from captured solids, MPXV DNA pre-amplification, and qPCR analysis. Of the 60 samples analyzed, a total of eight (13%) tested positive for MPXV in the states of Washington, Texas, New Jersey, and Illinois. The presence of clade IIb MPXV DNA in these samples was confirmed via Sanger sequencing and integration of pre-amplification prior to qPCR decreased the rate of false negative detections by 87% as compared to qPCR analysis alone. Wastewater-derived detections of MPXV were compared to clinical datasets, with 50% of detections occurring as clinical cases were increasing/peaking and 50% occurring as clinical cases waned. Results from the literature review (n = 9 studies) revealed successful strategies for the detection of MPXV DNA in wastewater, however also emphasized a need for further method optimization and standardization. Overall, this work highlights the use of pre-amplification prior to qPCR detection as a means to capture the presence of MPXV DNA in community wastewater and offers guidance for monitoring low-titer pathogens via WBE.

Indexed as

Monkeypox virusWastewaterEnvironmental MonitoringPilot ProjectsUnited StatesWastewater-Based Epidemiological MonitoringWastewaterEmerging pathogensMonkeypox virusPublic healthWastewater-based epidemiologyWastewater solidsWastewater surveillance

Identifiers

PMID37574063
PMCPMC10592092
OpenAlexW4385753665

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.