Evidence map›Paper›PMID 37573440›Full record

ArticleNature communications2023

Biosensor Guided Polyketide Synthases Engineering for Optimization of Domain Exchange Boundaries.

Elias Englund, Matthias Schmidt, Alberto A Nava, Sarah Klass, Leah Keiser, Qingyun Dan, Leonard Katz, Satoshi Yuzawa, Jay D Keasling

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  7. Article
  8. EngineeringMetabolic engineering communications · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 6 countries.

Elias EnglundJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0000-0002-0190-5659
Matthias SchmidtJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0000-0002-3363-4777
Alberto A NavaJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0000-0002-0172-4145
Sarah KlassJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0000-0002-1021-5342
Leah KeiserJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0009-0005-1098-655X
Qingyun DanJoint BioEnergy Institute, Emeryville, CA, USA.
Leonard KatzJoint BioEnergy Institute, Emeryville, CA, USA.
Satoshi YuzawaJoint BioEnergy Institute, Emeryville, CA, USA.
Jay D KeaslingJoint BioEnergy Institute, Emeryville, CA, USA. jdkeasling@lbl.gov.
Lawrence Berkeley National Laboratory · USJoint BioEnergy Institute · USScience for Life Laboratory · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type I modular polyketide synthases (PKSs) are multi-domain enzymes functioning like assembly lines. Many engineering attempts have been made for the last three decades to replace, delete and insert new functional domains into PKSs to produce novel molecules. However, inserting heterologous domains often destabilize PKSs, causing loss of activity and protein misfolding. To address this challenge, here we develop a fluorescence-based solubility biosensor that can quickly identify engineered PKSs variants with minimal structural disruptions. Using this biosensor, we screen a library of acyltransferase (AT)-exchanged PKS hybrids with randomly assigned domain boundaries, and we identify variants that maintain wild type production levels. We then probe each position in the AT linker region to determine how domain boundaries influence structural integrity and identify a set of optimized domain boundaries. Overall, we have successfully developed an experimentally validated, high-throughput method for making hybrid PKSs that produce novel molecules.

Indexed as

Polyketide SynthasesAmino Acid SequencePolyketide Synthases

Identifiers

PMID37573440
PMCPMC10423236
OpenAlexW4385780829

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.