Evidence map›Paper›PMID 37573057›Full record

ArticleIndian journal of medical microbiology

Validating saliva as a biological sample for cost-effective, rapid and routine screening for SARS-CoV-2.

B R Ansil, Carolin Elizabeth George, Sindhulina Chandrasingh, Ashwin Viswanathan, Mukund Thattai, Padinjat Raghu, Santhosha Devadiga, Arun Geetha Harikumar, Pulleri Kandi Harsha, Indu Nair and 2 more

Abstract read
In one paragraph

Article in Indian journal of medical microbiology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

B R AnsilNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, 560065, India. Electronic address: ansilbr@ncbs.res.in.
Carolin Elizabeth GeorgeCommunity Health and Research Division, Bangalore Baptist Hospital, Bangalore, Karnataka, 560024, India. Electronic address: carolinelizabethj@gmail.com.
Sindhulina ChandrasinghDepartment of Microbiology, Bangalore Baptist Hospital, Bangalore, Karnataka, 560024, India. Electronic address: sindhulinabbh@gmail.com.
Ashwin ViswanathanNature Conservation Foundation, Mysore, Karnataka, 570017, India. Electronic address: ashwinv2005@gmail.com.
Mukund ThattaiNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, 560065, India. Electronic address: thattai@ncbs.res.in.
Padinjat RaghuNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, 560065, India. Electronic address: praghu@ncbs.res.in.
Santhosha DevadigaCOVID-19 Testing Laboratory, Institute for Stem Cell Science and Regenerative Medicine, Bangalore Life Science Cluster, Bangalore, Karnataka, 560065, India. Electronic address: santhosh.bailur@fathermuller.in.
Arun Geetha HarikumarCOVID-19 Testing Laboratory, Institute for Stem Cell Science and Regenerative Medicine, Bangalore Life Science Cluster, Bangalore, Karnataka, 560065, India. Electronic address: arungh1993@gmail.com.
Pulleri Kandi HarshaCOVID-19 Testing Laboratory, Institute for Stem Cell Science and Regenerative Medicine, Bangalore Life Science Cluster, Bangalore, Karnataka, 560065, India. Electronic address: harshabkrishnan@gmail.com.
Indu NairDepartment of Medicine and Infectious Diseases, Bangalore Baptist Hospital, Bangalore, Karnataka, 560024, India. Electronic address: indudeep@yahoo.com.
Uma RamakrishnanNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, 560065, India. Electronic address: uramakri@ncbs.res.in.
Satyajit MayorNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, 560065, India. Electronic address: mayor@ncbs.res.in.

Funding

Wellcome Trust
6 · The paper itself

Abstract

purposeCompared to nasopharyngeal/oropharyngeal swabs (N/OPS-VTM), non-invasive saliva samples have enormous potential for scalability and routine population screening of SARS-CoV-2. In this study, we investigate the efficacy of saliva samples relative to N/OPS-VTM for use as a direct source for RT-PCR based SARS-CoV-2 detection.

methodsWe collected paired nasopharyngeal/oropharyngeal swabs and saliva samples from suspected positive SARS-CoV-2 patients and tested using RT-PCR. We used generalized linear models to investigate factors that explain result agreement. Further, we used simulations to evaluate the effectiveness of saliva-based screening in restricting the spread of infection in a large campus such as an educational institution.

resultsWe observed a 75.4% agreement between saliva and N/OPS-VTM, that increased drastically to 83% in samples stored for less than three days. Such samples processed within two days of collection showed 74.5% test sensitivity. Our simulations suggest that a test with 75% sensitivity, but high daily capacity can be very effective in limiting the size of infection clusters in a workspace. Guided by these results, we successfully implemented a saliva-based screening in the Bangalore Life Sciences Cluster (BLiSC) campus.

conclusionThese results suggest that saliva may be a viable alternate source for SARS-CoV-2 surveillance if samples are processed immediately. Although saliva shows slightly lower sensitivity levels when compared to N/OPS-VTM, saliva collection is logistically advantageous. We strongly recommend the implementation of saliva-based screening strategies for large workplaces and in schools, as well as for population-level screening and routine surveillance as we learn to live with the SARS-CoV-2 virus.

Indexed as

COVID-19SalivaCost-Benefit AnalysisHumansIndiaNasopharynxSARS-CoV-2Specimen HandlingNasopharyngeal swabPandemicRespiratory virusSalivaDirectSARS-CoV-2Surveillance

Identifiers

PMID37573057
PMCPMC10231307

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.