Evidence map›Paper›PMID 37571608›Full record

ArticleSensors (Basel, Switzerland)2023

A Novel Method for Quantifying Plant Morphological Characteristics Using Normal Vectors and Local Curvature Data via 3D Modelling-A Case Study in Leaf Lettuce.

Kaede C Wada, Atsushi Hayashi, Unseok Lee, Takanari Tanabata, Sachiko Isobe, Hironori Itoh, Hideki Maeda, Satoshi Fujisako, Nobuo Kochi

Abstract read
In one paragraph

Article in Sensors (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kaede C WadaBreeding Big Data Management and Utilization Group, Division of Smart Breeding Research, Institute of Crop Science, National Agriculture and Food Research Organization (NARO), Tsukuba 305-0856, Japan.
Atsushi HayashiResearch Center for Agricultural Robotics, Core Technology Research Headquarters, NARO, Tsukuba 305-0856, Japan.ORCID 0000-0001-5573-9126
Unseok LeeResearch Center for Agricultural Robotics, Core Technology Research Headquarters, NARO, Tsukuba 305-0856, Japan.
Takanari TanabataDepartment of Frontier Research Plant Genomics and Genetics, Kazusa DNA Research Institute, Kisarazu 292-0818, Japan.
Sachiko IsobeDepartment of Frontier Research Plant Genomics and Genetics, Kazusa DNA Research Institute, Kisarazu 292-0818, Japan.
Hironori ItohBreeding Big Data Management and Utilization Group, Division of Smart Breeding Research, Institute of Crop Science, National Agriculture and Food Research Organization (NARO), Tsukuba 305-0856, Japan.
Hideki MaedaCenter for Seeds and Seedlings, Nishinihon Station (NARO), Kasaoka 714-0054, Japan.
Satoshi FujisakoCenter for Seeds and Seedlings, Nishinihon Station (NARO), Kasaoka 714-0054, Japan.
Nobuo KochiResearch Center for Agricultural Robotics, Core Technology Research Headquarters, NARO, Tsukuba 305-0856, Japan.

Funding

Government of Japan BAC1004
6 · The paper itself

Abstract

Three-dimensional measurement is a high-throughput method that can record a large amount of information. Three-dimensional modelling of plants has the possibility to not only automate dimensional measurement, but to also enable visual assessment to be quantified, eliminating ambiguity in human judgment. In this study, we have developed new methods that could be used for the morphological analysis of plants from the information contained in 3D data. Specifically, we investigated characteristics that can be measured by scale (dimension) and/or visual assessment by humans. The latter is particularly novel in this paper. The characteristics that can be measured on a scale-related dimension were tested based on the bounding box, convex hull, column solid, and voxel. Furthermore, for characteristics that can be evaluated by visual assessment, we propose a new method using normal vectors and local curvature (LC) data. For these examinations, we used our highly accurate all-around 3D plant modelling system. The coefficient of determination between manual measurements and the scale-related methods were all above 0.9. Furthermore, the differences in LC calculated from the normal vector data allowed us to visualise and quantify the concavity and convexity of leaves. This technique revealed that there were differences in the time point at which leaf blistering began to develop among the varieties. The precise 3D model made it possible to perform quantitative measurements of lettuce size and morphological characteristics. In addition, the newly proposed LC-based analysis method made it possible to quantify the characteristics that rely on visual assessment. This research paper was able to demonstrate the following possibilities as outcomes: (1) the automation of conventional manual measurements, and (2) the elimination of variability caused by human subjectivity, thereby rendering evaluations by skilled experts unnecessary.

Indexed as

Imaging, Three-DimensionalLactucaComputer Simulation3Dblisteringcompactnessleaf lettuce (Lactuca sativa)local curvaturemeasurementnormal vectorphenotypingpoint cloudvisual assessment

Identifiers

PMID37571608
PMCPMC10422436

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.