Evidence map›Paper›PMID 37570695›Full record

ArticleMolecules (Basel, Switzerland)2023

Tag and Snag: A New Platform for Bioactive Natural Product Screening from Mixtures.

Jeremy Seidel, Yongle Du, Rohin Devanathan, Richard Law, Zhijuan Hu, Nicholas A Zill, Anthony T Iavarone, Wenjun Zhang

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 73% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jeremy SeidelDepartment of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, CA 94720-3220, USA.ORCID 0000-0002-6606-0298
Yongle DuDepartment of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, CA 94720-3220, USA.
Rohin DevanathanDepartment of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, CA 94720-3220, USA.
Richard LawDepartment of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, CA 94720-3220, USA.
Zhijuan HuDepartment of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, CA 94720-3220, USA.
Nicholas A ZillDepartment of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, CA 94720-3220, USA.
Anthony T IavaroneCalifornia Institute for Quantitative Biosciences (QB3), University of California Berkeley, Berkeley, CA 94720-3220, USA.
Wenjun ZhangDepartment of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, CA 94720-3220, USA.ORCID 0000-0001-9348-972X
QB3 · USUniversity of California, Berkeley · US

Funding

Biosynthesis of unusual bio-orthogonal functionalities in natural productsR01GM136758 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZHANG, WENJUN · 2020 to 2023
$1.5M
NIGMS NIH HHS R01 GM136758NIH HHS R01GM136758
6 · The paper itself

Abstract

Natural products provide an unparalleled diversity of small molecules to fuel drug screening efforts, but deconvoluting the pharmacological activity of natural product mixtures to identify key bioactive compounds remains a vexing and labor-intensive process. Therefore, we have developed a new platform to probe the non-specific pharmacological potential of compounds present in common dietary supplements via shotgun derivatization with isotopically labeled propanoic acid, a live cell affinity assay, which was used to selectively recognize the population of compounds which bind tightly to HeLa cells in culture, and a computational LC-MS data analysis of isotopically labeled compounds from cell lysate. The data analysis showed that hundreds of compounds were successfully derivatized in each extract, and dozens of those compounds showed high affinity for HeLa cells. In total, over a thousand isotopically labeled compounds were screened for cell affinity across three separate experiments, resulting in the identification of several known bioactive compounds with specific protein targets and six previously unreported structures. The new natural products include three tulsinol compounds which were isolated from

Indexed as

AlkaloidsBiological ProductsDrug DiscoveryHeLa CellsHumansMass SpectrometryAlkaloidsBiological Productsmass spectrometrynatural productspharmacology

Identifiers

PMID37570695
PMCPMC10421080
OpenAlexW4385422146

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.