Evidence map›Paper›PMID 37569524›Full record

ArticleInternational journal of molecular sciences2023

Integrated Metabolome and Transcriptome Analysis Provides New Insights into the Glossy Graft Cucumber Fruit (

Jie Ren, Lu Yang, Ruifang Cao, Yidan Wang, Can Zhang, Xuejing Yu, Wendi Meng, Xueling Ye

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Advances in Molecular Plant Sciences.International journal of molecular sciences · 2024
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jie RenCollege of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenhe District, Shenyang 110866, China.
Lu YangCollege of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenhe District, Shenyang 110866, China.
Ruifang CaoCollege of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenhe District, Shenyang 110866, China.
Yidan WangCollege of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenhe District, Shenyang 110866, China.
Can ZhangCollege of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenhe District, Shenyang 110866, China.
Xuejing YuCollege of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenhe District, Shenyang 110866, China.
Wendi MengCollege of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenhe District, Shenyang 110866, China.
Xueling YeCollege of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenhe District, Shenyang 110866, China.ORCID 0000-0002-1528-2261
Shenyang Agricultural University · CN

Funding

National Natural Science Foundation of China 32172549
6 · The paper itself

Abstract

Cucumber is an important vegetable crop, and grafts often affect the quality and wax loss in cucumber fruit and affect its value. However, their metabolites and molecular mechanisms of action remain unclear. Metabolome and transcriptome analyses were conducted on the fruit peels of self-rooted plants (SR) grafted with white seed pumpkin (WG). The results showed that there were 352 differential metabolites in the fruit peels of the SR and WG. The transcriptome analysis showed 1371 differentially expressed genes (DEGs) between the WG and SR. These differentially expressed genes were significantly enriched in plant hormone signal transduction, cutin, suberin, wax biosynthesis, phenylpropanoid biosynthesis, and zeatin biosynthesis. By analyzing the correlation between differential metabolites and differentially expressed genes, six candidate genes related to the synthesis of glycitein, kaempferol, and homoeriodictyol were identified as being potentially important. Key transcription factors belonging to the TCP and WRKY families may be the main drivers of transcriptional changes in the peel between the SR and WG. The results of this study have provided a basis for the biosynthesis and regulation of wax loss and quality in grafted cucumbers and represents an important step toward identifying the molecular mechanisms of grafting onto cucumber fruit.

Indexed as

Cucumis sativusFruitGene Expression ProfilingGene Expression Regulation, PlantHumansMetabolomePlant Growth RegulatorsPlant ProteinsTranscriptomePlant Growth RegulatorsPlant ProteinsCucumis sativus L.differentially expressed genesgraftwax powder

Identifiers

PMID37569524
PMCPMC10418779
OpenAlexW4385422694

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.