Evidence map›Paper›PMID 37568917›Full record

ArticleDiagnostics (Basel, Switzerland)2023

How South Africa Used National Cycle Threshold (Ct) Values to Continuously Monitor SARS-CoV-2 Laboratory Test Quality.

Lesley Erica Scott, Nei-Yuan Hsiao, Graeme Dor, Lucia Hans, Puleng Marokane, Manuel Pedro da Silva, Wolfgang Preiser, Helena Vreede, Jonathan Tsoka, Koleka Mlisana and 1 more

Open access · goldAbstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Lesley Erica ScottWits Diagnostic Innovation Hub, Faculty of Health Science, University of the Witwatersrand, Johannesburg 2093, South Africa.ORCID 0000-0001-6573-9525
Nei-Yuan HsiaoDivision of Medical Virology, Faculty of Heath Sciences, University of Cape Town, Cape Town 7700, South Africa.
Graeme DorWits Diagnostic Innovation Hub, Faculty of Health Science, University of the Witwatersrand, Johannesburg 2093, South Africa.
Lucia HansWits Diagnostic Innovation Hub, Faculty of Health Science, University of the Witwatersrand, Johannesburg 2093, South Africa.ORCID 0000-0002-0330-4857
Puleng MarokaneThe National Priority Program of the National Health Laboratory Service, Johannesburg, Private Bag X8, Sandringham 2131, South Africa.
Manuel Pedro da SilvaWits Diagnostic Innovation Hub, Faculty of Health Science, University of the Witwatersrand, Johannesburg 2093, South Africa.ORCID 0000-0002-9869-5271
Wolfgang PreiserThe National Health Laboratory Service, Johannesburg, Private Bag X8, Sandringham 2131, South Africa.ORCID 0000-0002-0254-7910
Helena VreedeThe National Health Laboratory Service, Johannesburg, Private Bag X8, Sandringham 2131, South Africa.ORCID 0000-0002-6644-6027
Jonathan TsokaWits Diagnostic Innovation Hub, Faculty of Health Science, University of the Witwatersrand, Johannesburg 2093, South Africa.ORCID 0009-0002-0337-7260
Koleka MlisanaThe National Health Laboratory Service, Johannesburg, Private Bag X8, Sandringham 2131, South Africa.
Wendy Susan StevensWits Diagnostic Innovation Hub, Faculty of Health Science, University of the Witwatersrand, Johannesburg 2093, South Africa.
National Health Laboratory Service · ZAUniversity of the Witwatersrand · ZA

Funding

Evaluating the tuberculosis epidemic in South Africa using a novel ten-year cohortR01AI152126 · NIAID · WITS HEALTH CONSORTIUM (PTY), LTD · PI JENKINS, HELEN E., SCOTT, LESLEY · 2020 to 2024
$1.6M
NIAID NIH HHS R01 AI152126NIH HHS R01A1152126
6 · The paper itself

Abstract

The high demand for SARS-CoV-2 tests but limited supply to South African laboratories early in the COVID-19 pandemic resulted in a heterogenous diagnostic footprint of open and closed molecular testing platforms being implemented. Ongoing monitoring of the performance of these multiple and varied systems required novel approaches, especially during the circulation of variants. The National Health Laboratory Service centrally collected cycle threshold (Ct) values from 1,497,669 test results reported from 6 commonly used PCR assays in 36 months, and visually monitored changes in their median Ct within a 28-day centered moving average for each assays' gene targets. This continuous quality monitoring rapidly identified delayed hybridization of

Indexed as

continuous quality monitoringCOVID-19cycle thresholdlaboratory diagnosticsmedian Ctmoving averagePCR platformsSARS-CoV-2variants

Identifiers

PMID37568917
PMCPMC10416981
OpenAlexW4385445303

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.