Evidence map›Paper›PMID 37568662›Full record

ArticleCancers2023

Integrative Transcriptomic Profiling of the Wilms Tumor.

Simona Lucija Avčin, Klementina Črepinšek, Barbara Jenko Bizjan, Robert Šket, Jernej Kovač, Blaž Vrhovšek, Jerca Blazina, Olga Blatnik, Robert Kordič, Lidija Kitanovski and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Simona Lucija AvčinDepartment of Haematology and Oncology, University Children's Hospital, University Medical Centre Ljubljana (UMC), 1000 Ljubljana, Slovenia.
Klementina ČrepinšekFaculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia.
Barbara Jenko BizjanFaculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia.
Robert ŠketInstitute of Special Laboratory Diagnostic, University Children's Hospital, University Medical Centre Ljubljana (UMC), 1000 Ljubljana, Slovenia.
Jernej KovačFaculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia.ORCID 0000-0003-3080-4838
Blaž VrhovšekFaculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia.
Jerca BlazinaDepartment of Pathology, Institute of Oncology Ljubljana, 1000 Ljubljana, Slovenia.
Olga BlatnikDepartment of Pathology, Institute of Oncology Ljubljana, 1000 Ljubljana, Slovenia.
Robert KordičDepartment of Pediatric Surgery, University Children's Hospital, University Medical Centre Ljubljana (UMC), 1000 Ljubljana, Slovenia.
Lidija KitanovskiDepartment of Haematology and Oncology, University Children's Hospital, University Medical Centre Ljubljana (UMC), 1000 Ljubljana, Slovenia.
Janez JazbecDepartment of Haematology and Oncology, University Children's Hospital, University Medical Centre Ljubljana (UMC), 1000 Ljubljana, Slovenia.
Maruša DebeljakFaculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia.
Tine TesovnikInstitute of Special Laboratory Diagnostic, University Children's Hospital, University Medical Centre Ljubljana (UMC), 1000 Ljubljana, Slovenia.ORCID 0000-0002-0234-2122
University of Ljubljana · SILjubljana University Medical Centre · SIInstitute of Oncology Ljubljana · SI

Funding

Ljubljana University Medical Centre 20150077
6 · The paper itself

Abstract

Our study aimed to identify relevant transcriptomic biomarkers for the Wilms tumor, the most common pediatric kidney cancer, independent of the histological type and stage. Using next-generation sequencing, we analyzed the miRNA profiles of 74 kidney samples, which were divided into two independent groups: fresh frozen tissue and formalin-fixed paraffin-embedded tissue samples. Subsequent mRNA expression profiling and pathway analysis were performed to establish the interplay and potential involvement of miRNAs and mRNA in the Wilms tumor. Comparative analysis, irrespective of post-dissection tissue processing, revealed 41 differentially expressed miRNAs, with 27 miRNAs having decreased expression and 14 miRNAs having increased expression in the Wilms tumor tissue compared to healthy kidney tissue. Among global mRNA transcriptomic profile differences, cross-sectional analysis suggested a limited list of genes potentially regulated by differentially expressed miRNAs in the Wilms tumor. This study identified the comprehensive miRNA and mRNA profile of the Wilms tumor using next-generation sequencing and bioinformatics approach, providing better insights into the pathogenesis of the Wilms tumor. The identified Wilms tumor miRNAs have potential as biomarkers for the diagnosis and treatment of the Wilms tumor, regardless of histological subtype and disease stage.

Indexed as

miRNA profilemRNA profileNGSuniversal biomarkersWilms tumor

Identifiers

PMID37568662
PMCPMC10416970
OpenAlexW4385422653

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.