Evidence map›Paper›PMID 37565483›Full record

ArticleG3 (Bethesda, Md.)2023

An expanded GCaMP reporter toolkit for functional imaging in Caenorhabditis elegans.

Jimmy Ding, Lucinda Peng, Sihoon Moon, Hyun Jee Lee, Dhaval S Patel, Hang Lu

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Jimmy DingInterdisciplinary Bioengineering Graduate Program, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Lucinda PengInterdisciplinary Bioengineering Graduate Program, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Sihoon MoonSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Hyun Jee LeeSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.ORCID 0000-0002-1269-0913
Dhaval S PatelSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Hang LuInterdisciplinary Bioengineering Graduate Program, Georgia Institute of Technology, Atlanta, GA 30332, USA.

Funding

Systems variation underlying the genetics of agingR01AG056436 · NIA · UNIVERSITY OF OREGON · PI LU, HANG, PHILLIPS, PATRICK C. · 2017 to 2021
$2.7M
Functional Analysis of Whole-Brain Dynamics in LearningR01NS115484 · NINDS · HARVARD UNIVERSITY · PI LU, HANG, ZHANG, YUN · 2020 to 2024
$2.4M
Quantitative Understanding of Mechnosensory Circuit on ChipR01NS096581 · NINDS · GEORGIA INSTITUTE OF TECHNOLOGY · PI LU, HANG · 2016 to 2020
$1.7M
NIA NIH HHS R01 AG056436NINDS NIH HHS R01 NS096581NINDS NIH HHS R01 NS115484
6 · The paper itself

Abstract

In living organisms, changes in calcium flux are integral to many different cellular functions and are especially critical for the activity of neurons and myocytes. Genetically encoded calcium indicators (GECIs) have been popular tools for reporting changes in calcium levels in vivo. In particular, GCaMPs, derived from GFP, are the most widely used GECIs and have become an invaluable toolkit for neurophysiological studies. Recently, new variants of GCaMP, which offer a greater variety of temporal dynamics and improved brightness, have been developed. However, these variants are not readily available to the Caenorhabditis elegans research community. This work reports a set of GCaMP6 and jGCaMP7 reporters optimized for C. elegans studies. Our toolkit provides reporters with improved dynamic range, varied kinetics, and targeted subcellular localizations. Besides optimized routine uses, this set of reporters is also well suited for studies requiring fast imaging speeds and low magnification or low-cost platforms.

Indexed as

Caenorhabditis elegansCalciumAnimalsNeuronsSignal TransductionCalciumCaenorhabditis eleganscalcium reportersGCaMPimagingmechanosensationmicrofluidics

Identifiers

PMID37565483
PMCPMC10542313

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.