Evidence map›Paper›PMID 37563458›Full record

ArticleNature plants2023

Epigenetic silencing of callose synthase by VIL1 promotes bud-growth transition in lily bulbs.

Wenqiang Pan, Jingru Li, Yunpeng Du, Yajie Zhao, Yin Xin, Shaokun Wang, Chang Liu, Zhimin Lin, Shaozhong Fang, Yingdong Yang and 5 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
18.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 46 citations in OpenAlex.

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  20. Molecular advances in bud dormancy in trees.Journal of experimental botany · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Wenqiang Pan *Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China.ORCID http://orcid.org/0009-0007-9830-4203
Jingru Li *Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China.ORCID http://orcid.org/0000-0002-0946-0201
Yunpeng Du *Institute of Grassland, Flowers, and Ecology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.ORCID http://orcid.org/0000-0001-7188-1309
Yajie ZhaoBeijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China.ORCID http://orcid.org/0009-0003-4590-1611
Yin XinBeijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China.ORCID http://orcid.org/0000-0002-9491-7455
Shaokun WangBeijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China.ORCID http://orcid.org/0009-0002-1685-1945
Chang LiuBeijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China.ORCID http://orcid.org/0009-0008-1238-0027
Zhimin LinInstitute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou, China.ORCID http://orcid.org/0009-0005-1651-4123
Shaozhong FangInstitute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou, China.ORCID http://orcid.org/0009-0004-2156-7409
Yingdong YangInstitute of Floriculture, Liaoning Academy of Agricultural Sciences, Shenyang, China.
Michele ZaccaiDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.ORCID http://orcid.org/0000-0003-3729-6039
Xiuhai ZhangInstitute of Grassland, Flowers, and Ecology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-7854-6287
Mingfang YiBeijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China.ORCID http://orcid.org/0000-0001-8396-8110
Sonia GazzarriniDepartment of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0003-4445-5659
Jian WuBeijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China. jianwu@cau.edu.cn.ORCID http://orcid.org/0000-0001-8582-302X
China Agricultural University · CNFujian Academy of Agricultural Sciences · CNInstitute of Grassland Research · CNBen-Gurion University of the Negev · ILLiaoning Academy of Agricultural Sciences · CNUniversity of Toronto · CA

Funding

Beijing Council of Science and Technology 6212012National Natural Science Foundation of China (National Science Foundation of China) 32172617; 31701952
6 · The paper itself

Abstract

In plants, restoring intercellular communication is required for cell activity in buds during the growth transition from slow to fast growth after dormancy release. However, the epigenetic regulation of this phenomenon is far from understood. Here we demonstrate that lily VERNALIZATION INSENSITIVE 3-LIKE 1 (LoVIL1) confers growth transition by mediating plasmodesmata opening via epigenetic repression of CALLOSE SYNTHASE 3 (LoCALS3). Moreover, we found that a novel transcription factor, NUCLEAR FACTOR Y, SUBUNIT A7 (LoNFYA7), is capable of recruiting the LoVIL1-Polycomb Repressive Complex 2 (PRC2) and enhancing H3K27me3 at the LoCALS3 locus by recognizing the CCAAT cis-element (Cce) of its promoter. The LoNFYA7-LoVIL1 module serves as a key player in orchestrating the phase transition from slow to fast growth in lily bulbs. These studies also indicate that LoVIL1 is a suitable marker for the bud-growth-transition trait following dormancy release in lily cultivars.

Indexed as

Epigenesis, GeneticLiliumGene Expression Regulation, PlantGlucosyltransferasesPolycomb Repressive Complex 21,3-beta-glucan synthaseGlucosyltransferasesPolycomb Repressive Complex 2

Identifiers

PMID37563458
OpenAlexW4385737548

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.