Evidence map›Paper›PMID 37563456›Full record

ArticleNature plants2023

An IRE1-proteasome system signalling cohort controls cell fate determination in unresolved proteotoxic stress of the plant endoplasmic reticulum.

Dae Kwan Ko, Joo Yong Kim, Ethan A Thibault, Federica Brandizzi

Open access · greenAbstract read
In one paragraph

Article in Nature plants, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Mechanisms of Endoplasmic Reticulum Protein Homeostasis in Plants.International journal of molecular sciences · 2023
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Dae Kwan KoMSU-DOE Plant Research Lab, Michigan State University, East Lansing, MI, USA.ORCID 0000-0002-9720-5138
Joo Yong KimMSU-DOE Plant Research Lab, Michigan State University, East Lansing, MI, USA.ORCID 0000-0001-8828-7488
Ethan A ThibaultMSU-DOE Plant Research Lab, Michigan State University, East Lansing, MI, USA.ORCID 0000-0002-6318-6020
Federica BrandizziMSU-DOE Plant Research Lab, Michigan State University, East Lansing, MI, USA. fb@msu.edu.ORCID 0000-0003-0580-8888
Great Lakes Bioenergy Research Center · USMichigan State University · US

Funding

Unfolded protein response in the model species Arabidopsis thalianaR35GM136637 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Federica Brandizzi · 2020 to 2026
$2.6M
NIGMS NIH HHS R35 GM136637
6 · The paper itself

Abstract

Excessive accumulation of misfolded proteins in the endoplasmic reticulum (ER) causes ER stress, which is an underlying cause of major crop losses and devastating human conditions. ER proteostasis surveillance is mediated by the conserved master regulator of the unfolded protein response (UPR), Inositol Requiring Enzyme 1 (IRE1), which determines cell fate by controlling pro-life and pro-death outcomes through as yet largely unknown mechanisms. Here we report that Arabidopsis IRE1 determines cell fate in ER stress by balancing the ubiquitin-proteasome system (UPS) and UPR through the plant-unique E3 ligase, PHOSPHATASE TYPE 2CA (PP2CA)-INTERACTING RING FINGER PROTEIN 1 (PIR1). Indeed, PIR1 loss leads to suppression of pro-death UPS and the lethal phenotype of an IRE1 loss-of-function mutant in unresolved ER stress in addition to activating pro-survival UPR. Specifically, in ER stress, PIR1 loss stabilizes ABI5, a basic leucine zipper (bZIP) transcription factor, that directly activates expression of the critical UPR regulator gene, bZIP60, triggering transcriptional cascades enhancing pro-survival UPR. Collectively, our results identify new cell fate effectors in plant ER stress by showing that IRE1's coordination of cell death and survival hinges on PIR1, a key pro-death component of the UPS, which controls ABI5, a pro-survival transcriptional activator of bZIP60.

Indexed as

ArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsEndoplasmic ReticulumHumansProteasome Endopeptidase ComplexProtein Serine-Threonine KinasesProteotoxic StressArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsProteasome Endopeptidase ComplexProtein Serine-Threonine Kinases

Identifiers

PMID37563456
PMCPMC10481788
OpenAlexW4385741494

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.