Evidence map›Paper›PMID 37563326›Full record

ArticleNature chemistry2023

Optical control of ultrafast structural dynamics in a fluorescent protein.

Christopher D M Hutchison, James M Baxter, Ann Fitzpatrick, Gabriel Dorlhiac, Alisia Fadini, Samuel Perrett, Karim Maghlaoui, Salomé Bodet Lefèvre, Violeta Cordon-Preciado, Josie L Ferreira and 38 more

Open access · hybridAbstract read
In one paragraph

Article in Nature chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. XFEL Beamline Optical Instrumentation for Ultrafast Science.The journal of physical chemistry. B · 2024
    Review
  5. A snapshot love story: what serial crystallography has done and will do for us.Acta crystallographica. Section D, Structural biology · 2024
    Review
  6. Article
  7. 3D Nanocrystallography and the Imperfect Molecular Lattice.Annual review of physical chemistry · 2024
    Review
  8. Review
  9. Article
  10. The time revolution in macromolecular crystallography.Structural dynamics (Melville, N.Y.) · 2024
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

48 authors at 12 institutions in 6 countries.

Christopher D M Hutchison *Department of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
James M Baxter *Department of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.ORCID 0000-0002-4641-6760
Ann FitzpatrickDiamond Light Source Ltd, Harwell Science & Innovation Campus, Didcot, UK.ORCID 0000-0002-9748-3728
Gabriel DorlhiacDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
Alisia FadiniDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.ORCID 0000-0001-5246-9124
Samuel PerrettDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.ORCID 0000-0002-6728-0778
Karim MaghlaouiDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
Salomé Bodet LefèvreDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.ORCID 0000-0001-5135-1626
Violeta Cordon-PreciadoDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.ORCID 0000-0002-9849-885X
Josie L FerreiraDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
Volha U ChukhutsinaDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
Douglas GarrattQuantum Optics and Laser Science Group, Blackett Laboratory, Imperial College London, London, UK.ORCID 0000-0002-8637-9984
Jonathan BarnardQuantum Optics and Laser Science Group, Blackett Laboratory, Imperial College London, London, UK.
Gediminas GalinisQuantum Optics and Laser Science Group, Blackett Laboratory, Imperial College London, London, UK.ORCID 0000-0003-0240-305X
Flo GlencrossDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
Rhodri M MorganDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.ORCID 0000-0002-9760-3638
Sian StocktonDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
Ben TaylorDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
Letong YuanDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
Matthew G RomeiDepartment of Chemistry, Stanford University, Stanford, CA, USA.
Chi-Yun LinDepartment of Chemistry, Stanford University, Stanford, CA, USA.ORCID 0000-0001-6555-8767
Jon P MarangosQuantum Optics and Laser Science Group, Blackett Laboratory, Imperial College London, London, UK.ORCID 0000-0001-7169-6955
Marius SchmidtPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.ORCID 0000-0002-0962-9468
Viktoria ChatrchyanPhysikalisch Chemisches Institut, Ruprecht-Karls Universität Heidelberg, Heidelberg, Germany.ORCID 0000-0002-5361-3973
Tiago BuckupPhysikalisch Chemisches Institut, Ruprecht-Karls Universität Heidelberg, Heidelberg, Germany.ORCID 0000-0002-1194-0837
Dmitry MorozovNanoscience Center and Department of Chemistry, University of Jyväskylä, Jyväskylä, Finland.ORCID 0000-0001-9524-948X
Jaehyun ParkPohang Accelerator Laboratory, POSTECH, Pohang, Republic of Korea.ORCID 0000-0002-9007-4892
Sehan ParkPohang Accelerator Laboratory, POSTECH, Pohang, Republic of Korea.
Intae EomPohang Accelerator Laboratory, POSTECH, Pohang, Republic of Korea.
Minseok KimPohang Accelerator Laboratory, POSTECH, Pohang, Republic of Korea.
Dogeun JangPohang Accelerator Laboratory, POSTECH, Pohang, Republic of Korea.ORCID 0000-0003-1277-5279
Hyeongi ChoiPohang Accelerator Laboratory, POSTECH, Pohang, Republic of Korea.
HyoJung HyunPohang Accelerator Laboratory, POSTECH, Pohang, Republic of Korea.ORCID 0000-0002-3930-551X
Gisu ParkPohang Accelerator Laboratory, POSTECH, Pohang, Republic of Korea.
Eriko NangoRIKEN SPring-8 Center, Sayo, Hyogo, Japan.
Rie TanakaRIKEN SPring-8 Center, Sayo, Hyogo, Japan.ORCID 0000-0003-1062-4792
Shigeki OwadaRIKEN SPring-8 Center, Sayo, Hyogo, Japan.
Kensuke TonoRIKEN SPring-8 Center, Sayo, Hyogo, Japan.ORCID 0000-0003-1218-3759
Daniel P DePonteLinac Coherent Light Source, Stanford Linear Accelerator Centre (SLAC), National Accelerator Laboratory, Menlo Park, CA, USA.
Sergio CarbajoLinac Coherent Light Source, Stanford Linear Accelerator Centre (SLAC), National Accelerator Laboratory, Menlo Park, CA, USA.ORCID 0000-0002-5292-4470
Matt SeabergLinac Coherent Light Source, Stanford Linear Accelerator Centre (SLAC), National Accelerator Laboratory, Menlo Park, CA, USA.ORCID 0000-0002-4560-4698
Andrew AquilaLinac Coherent Light Source, Stanford Linear Accelerator Centre (SLAC), National Accelerator Laboratory, Menlo Park, CA, USA.ORCID 0000-0003-0358-2774
Sebastien BoutetLinac Coherent Light Source, Stanford Linear Accelerator Centre (SLAC), National Accelerator Laboratory, Menlo Park, CA, USA.ORCID 0000-0003-3928-1244
Anton BartyCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron, Hamburg, Germany.
So IwataRIKEN SPring-8 Center, Sayo, Hyogo, Japan.ORCID 0000-0003-1735-2937
Steven G BoxerDepartment of Chemistry, Stanford University, Stanford, CA, USA.ORCID 0000-0001-9167-4286
Gerrit GroenhofNanoscience Center and Department of Chemistry, University of Jyväskylä, Jyväskylä, Finland.ORCID 0000-0001-8148-5334
Jasper J van ThorDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK. j.vanthor@imperial.ac.uk.ORCID 0000-0001-6356-3116
Imperial College London · GBPohang University of Science and Technology · KRSLAC National Accelerator Laboratory · USStanford University · USHeidelberg University · DEKyoto University · JPSPring-8 · JPUniversity of Jyväskylä · FIDiamond Light Source · GBTohoku University · JPUniversität Hamburg · DEUniversity of Wisconsin–Milwaukee · US

Funding

Biophysical Studies of Macromolecules and Molecular AssembliesR35GM118044 · NIGMS · STANFORD UNIVERSITY · PI STEVEN G. BOXER · 2016 to 2026
$7.2M
NIGMS NIH HHS R35 GM118044
6 · The paper itself

Abstract

The photoisomerization reaction of a fluorescent protein chromophore occurs on the ultrafast timescale. The structural dynamics that result from femtosecond optical excitation have contributions from vibrational and electronic processes and from reaction dynamics that involve the crossing through a conical intersection. The creation and progression of the ultrafast structural dynamics strongly depends on optical and molecular parameters. When using X-ray crystallography as a probe of ultrafast dynamics, the origin of the observed nuclear motions is not known. Now, high-resolution pump-probe X-ray crystallography reveals complex sub-ångström, ultrafast motions and hydrogen-bonding rearrangements in the active site of a fluorescent protein. However, we demonstrate that the measured motions are not part of the photoisomerization reaction but instead arise from impulsively driven coherent vibrational processes in the electronic ground state. A coherent-control experiment using a two-colour and two-pulse optical excitation strongly amplifies the X-ray crystallographic difference density, while it fully depletes the photoisomerization process. A coherent control mechanism was tested and confirmed the wave packets assignment.

Indexed as

RhodopsinVibrationHydrogen BondingMotionRhodopsin

Identifiers

PMID37563326
PMCPMC10624617
OpenAlexW4385737667

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.