Evidence map›Paper›PMID 37563289›Full record

ArticleNature microbiology2023

Bacterial amylases enable glycogen degradation by the vaginal microbiome.

Dominick J Jenkins, Benjamin M Woolston, M Indriati Hood-Pishchany, Paula Pelayo, Alyssa N Konopaski, M Quinn Peters, Michael T France, Jacques Ravel, Caroline M Mitchell, Seth Rakoff-Nahoum and 2 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07446205 (Poi for Mama), which is not on this map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT07446205 narecruitingnot on this mapstarted 2026, after this paper: background citation

Poi for Mama: a Pilot to Improve Maternal Microbiome and Gestational Diabetes Risk

TypeinterventionalSponsorUniversity of HawaiiRan2026 to 2027Enrolled50ConditionsGestational Diabetes Mellitus (GDM), PregnancyArmsFermented Poi
3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 51 citations in OpenAlex.

  1. Trial
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  6. Bursa of Fabricius-independent B cells establish an IgA-mediated intestinal barrier that safeguards gut-liver homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Review
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  10. Type 2 diabetes mellitus exacerbates vaginal group BbioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Article
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  14. Structural and mechanistic diversity of glycogen phosphorylases from gut bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Dominick J Jenkins *Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.ORCID 0000-0002-5091-2097
Benjamin M Woolston *Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.ORCID 0000-0002-6570-2236
M Indriati Hood-PishchanyDivision of Infectious Diseases and Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital, Boston, MA, USA.
Paula PelayoDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.ORCID 0009-0004-1508-2034
Alyssa N KonopaskiDepartment of Chemistry, Seattle University, Seattle, WA, USA.ORCID 0000-0002-3138-2342
M Quinn PetersDepartment of Chemistry, Seattle University, Seattle, WA, USA.ORCID 0000-0001-9832-3219
Michael T FranceInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA.
Jacques RavelInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-0851-2233
Caroline M MitchellVincent Center for Reproductive Biology, Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0001-9924-2349
Seth Rakoff-NahoumDivision of Infectious Diseases and Division of Gastroenterology, Department of Pediatrics, Boston Children's Hospital, Boston, MA, USA. seth.rakoff-nahoum@childrens.harvard.edu.ORCID 0000-0002-3233-0675
Christopher WhidbeyDepartment of Chemistry, Seattle University, Seattle, WA, USA. whidbeyc@seattleu.edu.ORCID 0000-0002-2039-4284
Emily P BalskusDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA. balskus@chemistry.harvard.edu.ORCID 0000-0001-5985-5714
Harvard University · USSeattle University · USBoston Children's Hospital · USUniversity of Maryland, Baltimore · USHoward Hughes Medical Institute · USNortheastern University · US

Funding

Pediatric Scientist Development Program (PSDP) [K12]K12HD000850 · NICHD · YALE UNIVERSITY · PI Sallie R. Permar · 1987 to 2026
$44.1M
Programmable benchtop bioreactors for scalable eco-evolutionary dynamics of the human microbiomeR01AI171100 · NIAID · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI KHALIL, AHMAD SAMIR, RAKOFF-NAHOUM, SETH · 2022 to 2025
$4.1M
Positive Selection as a Host Mechanism to Control the MicrobiomeDP2GM136652 · NIGMS · BOSTON CHILDREN'S HOSPITAL · PI RAKOFF-NAHOUM, SETH · 2019 to 2019
$2.7M
Carbohydrate Public Good Interactions in Healthy and Dysbiotic Bacteroidales CommunitiesK08AI130392 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI RAKOFF-NAHOUM, SETH · 2017 to 2021
$905k
Howard Hughes Medical InstituteNIAID NIH HHS K08 AI130392NIAID NIH HHS R01 AI171100NICHD NIH HHS K12 HD000850NIGMS NIH HHS DP2 GM136652
6 · The paper itself

Abstract

The human vaginal microbiota is frequently dominated by lactobacilli and transition to a more diverse community of anaerobic microbes is associated with health risks. Glycogen released by lysed epithelial cells is believed to be an important nutrient source in the vagina. However, the mechanism by which vaginal bacteria metabolize glycogen is unclear, with evidence implicating both bacterial and human enzymes. Here we biochemically characterize six glycogen-degrading enzymes (GDEs), all of which are pullanases (PulA homologues), from vaginal bacteria that support the growth of amylase-deficient Lactobacillus crispatus on glycogen. We reveal variations in their pH tolerance, substrate preferences, breakdown products and susceptibility to inhibition. Analysis of vaginal microbiome datasets shows that these enzymes are expressed in all community state types. Finally, we confirm the presence and activity of bacterial and human GDEs in cervicovaginal fluid. This work establishes that bacterial GDEs can participate in the breakdown of glycogen, providing insight into metabolism that may shape the vaginal microbiota.

Indexed as

AmylasesMicrobiotaBacteriaFemaleGlycogenHumansVaginaAmylasesGlycogen

Identifiers

PMID37563289
PMCPMC10465358
OpenAlexW4385741861

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.