Evidence map›Paper›PMID 37562955›Full record

ArticleDrug metabolism and disposition: the biological fate of chemicals2023

The Utility of Mixed Effects Models in the Evaluation of Complex Genomic Traits In Vitro.

Nathan Alade, Abhinav Nath, Nina Isoherranen, Kenneth E Thummel

Open access · bronzeAbstract read
In one paragraph

Article in Drug metabolism and disposition: the biological fate of chemicals, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Cytochrome P450 FamilyACS pharmacology & translational science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nathan AladeDepartment of Pharmaceutics (N.A., N.I., K.E.T.) and Medicinal Chemistry (A.N.), School of Pharmacy, University of Washington, Seattle, Washington alade@uw.edu.
Abhinav NathDepartment of Pharmaceutics (N.A., N.I., K.E.T.) and Medicinal Chemistry (A.N.), School of Pharmacy, University of Washington, Seattle, Washington.
Nina IsoherranenDepartment of Pharmaceutics (N.A., N.I., K.E.T.) and Medicinal Chemistry (A.N.), School of Pharmacy, University of Washington, Seattle, Washington.ORCID 0000-0002-9548-3126
Kenneth E ThummelDepartment of Pharmaceutics (N.A., N.I., K.E.T.) and Medicinal Chemistry (A.N.), School of Pharmacy, University of Washington, Seattle, Washington.
University of Washington · US

Funding

Vitamin K gene network: Variant discovery and characterizationP01GM116691 · NIGMS · UNIVERSITY OF WASHINGTON · PI RETTIE, ALLAN EDWARD · 2016 to 2020
$7.6M
NIGMS NIH HHS P01 GM116691
6 · The paper itself

Abstract

In pharmacogenomic studies, the use of human liver microsomes as a model system to evaluate the impact of complex genomic traits (i.e., linkage-disequilibrium patterns, coding, and non-coding variation, etc.) on efficiency of drug metabolism is challenging. To accurately predict the true effect size of genomic traits requires large richly sampled datasets representative of the study population. Moreover, the acquisition of this data can be labor-intensive if the study design or bioanalytical methods are not high throughput, and it is potentially unfeasible if the abundance of sample needed for experiments is limited. To overcome these challenges, we developed a novel strategic approach using non-linear mixed effects models (NLME) to determine enzyme kinetic parameters for individual liver specimens using sparse data. This method can facilitate evaluation of the impact that complex genomic traits have on the metabolism of xenobiotics in vitro when tissue and other resources are limited. In addition to facilitating the accrual of data, it allows for rigorous testing of covariates as sources of kinetic parameter variability. In this

Indexed as

Cytochrome P-450 CYP2D6Cytochrome P-450 Enzyme SystemGenomicsHumansKineticsLiverMicrosomes, LiverCytochrome P-450 CYP2D6Cytochrome P-450 Enzyme System

Identifiers

PMID37562955
PMCPMC10586510
OpenAlexW4385719200

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.