MineProt: a stand-alone server for structural proteome curation.

Yunchi Zhu, Chengda Tong, Zuohan Zhao, Zuhong Lu

Abstract read

In one paragraph

Article in Database : the journal of biological databases and curation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it

0cells of the map it votes in

1citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

A graphic and command line protocol for quick and accurate comparisons of protein and nucleic acid structures with US-align.Nature protocols · 2026
Review

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yunchi ZhuState Key Laboratory of Digital Medical Engineering, Southeast University, Sipailou No. 2, Nanjing, Jiangsu 210096, China.ORCID 0000-0003-0818-2585

Chengda TongSchool of Biological Science and Medical Engineering, Southeast University, Sipailou No. 2, Nanjing, Jiangsu 210096, China.

Zuohan ZhaoSchool of Biological Science and Medical Engineering, Southeast University, Sipailou No. 2, Nanjing, Jiangsu 210096, China.

Zuhong LuState Key Laboratory of Digital Medical Engineering, Southeast University, Sipailou No. 2, Nanjing, Jiangsu 210096, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

AlphaFold-like systems are rapidly expanding the scale of proteome structuring, and MineProt provides an effective solution for custom curation of these novel high-throughput data. It enables researchers to build their own server in simple steps, run almost out-of-the-box scripts to annotate and curate their proteins, analyze their data via a user-friendly online interface, and utilize plugins to extend the functionality of server. It is expected to support researcher productivity and facilitate data sharing in the new era of structural proteomics. Database URL MineProt is open-source software available at https://github.com/huiwenke/MineProt.

Indexed as

ProteomeSoftwareDatabases, FactualProteomicsProteome

Identifiers

PMID37562062

DOI10.1093/database/baad059

PMCPMC10414801

What OpenQuestion holds

Textmetadata

LicenceCC BY

Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.