Evidence map›Paper›PMID 37558896›Full record

ReviewNature protocols2023

In vivo fluorescent labeling and tracking of extracellular matrix.

Adrian Fischer, Donovan Correa-Gallegos, Juliane Wannemacher, Simon Christ, Hans-Günther Machens, Yuval Rinkevich

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature protocols, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Adrian Fischer *Helmholtz Zentrum München, Institute of Regenerative Biology & Medicine, Munich, Germany. adrian.fischer@helmholtz-munich.de.
Donovan Correa-Gallegos *Helmholtz Zentrum München, Institute of Regenerative Biology & Medicine, Munich, Germany.
Juliane WannemacherHelmholtz Zentrum München, Institute of Regenerative Biology & Medicine, Munich, Germany.
Simon ChristHelmholtz Zentrum München, Institute of Regenerative Biology & Medicine, Munich, Germany.
Hans-Günther MachensTechnical University of Munich, School of Medicine, Klinikum rechts der Isar, Department of Plastic and Hand Surgery, Munich, Germany.
Yuval RinkevichHelmholtz Zentrum München, Institute of Regenerative Biology & Medicine, Munich, Germany. yuval.rinkevich@helmholtz-muenchen.de.
Helmholtz Zentrum München · DETechnical University of Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Connective tissues are essential building blocks for organ development, repair and regeneration. However, we are at the early stages of understanding connective tissue dynamics. Here, we detail a method that enables in vivo fate mapping of organ extracellular matrix (ECM) by taking advantage of a crosslinking chemical reaction between amine groups and N-hydroxysuccinimide esters. This methodology enables robust labeling of ECM proteins, which complement previous affinity-based single-protein methods. This protocol is intended for entry-level scientists and the labeling step takes between 5 and 10 min. ECM 'tagging' with fluorophores using N-hydroxysuccinimide esters enables visualization of ECM spatial modifications and is particularly useful to study connective tissue dynamics in organ fibrosis, tumor stroma formation, wound healing and regeneration. This in vivo chemical fate mapping methodology is highly versatile, regardless of the tissue/organ system, and complements cellular fate-mapping techniques. Furthermore, as the basic chemistry of proteins is highly conserved between species, this method is also suitable for cross-species comparative studies of ECM dynamics.

Indexed as

Extracellular MatrixSuccinimidesConnective TissueExtracellular Matrix ProteinsExtracellular Matrix ProteinsN-hydroxysuccinimideSuccinimides

Identifiers

PMID37558896
OpenAlexW4385708996

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.