Evidence map›Paper›PMID 37558676›Full record

ArticleScientific reports2023

Disease-associated astrocytes and microglia markers are upregulated in mice fed high fat diet.

Li Lin, Rashmita Basu, Debolina Chatterjee, Andrew T Templin, Jonathan N Flak, Travis S Johnson

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  6. The gut-brain axis: mechanisms linking intestinal dysbiosis with stroke.Frontiers in cell and developmental biology · 2026
    Review
  7. Article
  8. Article
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  11. Article
  12. Review
  13. High-Fat Diet Alters Behavior and Hippocampal Gene Expression.International journal of molecular sciences · 2025
    Article
  14. Heterogeneity of Astrocyte Reactivity.Annual review of neuroscience · 2025
    Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Li LinIndiana Biosciences Research Institute, Indianapolis, IN, USA.
Rashmita BasuIndiana Biosciences Research Institute, Indianapolis, IN, USA.
Debolina ChatterjeeDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, USA.
Andrew T TemplinIndiana Biosciences Research Institute, Indianapolis, IN, USA.
Jonathan N FlakIndiana Biosciences Research Institute, Indianapolis, IN, USA.
Travis S JohnsonIndiana Biosciences Research Institute, Indianapolis, IN, USA. johnstrs@iu.edu.
Indiana Biosciences Research Institute · USIndiana University School of MedicineIndiana University – Purdue University Indianapolis · USRichard L. Roudebush VA Medical Center · US

Funding

Translation CoreP30DK097512 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI AMBER L. MOSLEY · 2015 to 2026
$17.4M
Defining the neurocircuit activated by the VMH to control energy expenditure.R01DK136897 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI Jonathan Nicholas Flak · 2023 to 2026
$1.7M
DMS/NIGMS 1: Topological Study on Histological Images and Spatial TranscriptomicsR01GM148970 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI CHEN, CHAO, JOHNSON, TRAVIS STEELE · 2022 to 2024
$682k
Immune responses to islet amyloid in beta-cell deathIK2BX004659 · VA · VA PUGET SOUND HEALTHCARE SYSTEM · PI TEMPLIN, ANDREW T. · 2019 to 2023
–
BLRD VA IK2 BX004659NIDDK NIH HHS P30 DK097512NIDDK NIH HHS R01 DK136897NIGMS NIH HHS R01 GM148970
6 · The paper itself

Abstract

High-fat diet (HFD) is associated with Alzheimer's disease (AD) and type 2 diabetes risk, which share features such as insulin resistance and amylin deposition. We examined gene expression associated with astrocytes and microglia since dysfunction of these cell types is implicated in AD pathogenesis. We hypothesize gene expression changes in disease-associated astrocytes (DAA), disease-associated microglia and human Alzheimer's microglia exist in diabetic and obese individuals before AD development. By analyzing bulk RNA-sequencing (RNA-seq) data generated from brains of mice fed HFD and humans with AD, 11 overlapping AD-associated differentially expressed genes were identified, including Kcnj2, C4b and Ddr1, which are upregulated in response to both HFD and AD. Analysis of single cell RNA-seq (scRNA-seq) data indicated C4b is astrocyte specific. Spatial transcriptomics (ST) revealed C4b colocalizes with Gfad, a known astrocyte marker, and the colocalization of C4b expressing cells with Gad2 expressing cells, i.e., GABAergic neurons, in mouse brain. There also exists a positive correlation between C4b and Gad2 expression in ST indicating a potential interaction between DAA and GABAergic neurons. These findings provide novel links between the pathogenesis of obesity, diabetes and AD and identify C4b as a potential early marker for AD in obese or diabetic individuals.

Indexed as

Alzheimer DiseaseDiabetes Mellitus, Type 2AnimalsAstrocytesDiet, High-FatHumansMiceMicroglia

Identifiers

PMID37558676
PMCPMC10412627
OpenAlexW4385700859

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.