Evidence map›Paper›PMID 37557170›Full record

ArticleCell2023

Molecular mechanism for Tn7-like transposon recruitment by a type I-B CRISPR effector.

Shukun Wang, Clinton Gabel, Romana Siddique, Thomas Klose, Leifu Chang

Open access · greenAbstract read
In one paragraph

Article in Cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shukun WangDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
Clinton GabelDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
Romana SiddiqueDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
Thomas KloseDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
Leifu ChangDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA; Purdue Institute for Cancer Research, Purdue University, West Lafayette, IN 47907, USA. Electronic address: lchang18@purdue.edu.
Purdue University West Lafayette · US

Funding

Purdue University Molecular Biophysics Training ProgramT32GM132024 · NIGMS · PURDUE UNIVERSITY · PI Angeline Marie Lyon, John Tesmer · 2019 to 2026
$2.0M
Molecular basis for CRISPR RNA-guided nucleic acid cleavage and DNA transpositionR01GM138675 · NIGMS · PURDUE UNIVERSITY · PI CHANG, LEIFU · 2020 to 2024
$1.8M
NIGMS NIH HHS R01 GM138675NIGMS NIH HHS T32 GM132024
6 · The paper itself

Abstract

Tn7-like transposons have co-opted CRISPR-Cas systems to facilitate the movement of their own DNA. These CRISPR-associated transposons (CASTs) are promising tools for programmable gene knockin. A key feature of CASTs is their ability to recruit Tn7-like transposons to nuclease-deficient CRISPR effectors. However, how Tn7-like transposons are recruited by diverse CRISPR effectors remains poorly understood. Here, we present the cryo-EM structure of a recruitment complex comprising the Cascade complex, TniQ, TnsC, and the target DNA in the type I-B CAST from Peltigera membranacea cyanobiont 210A. Target DNA recognition by Cascade induces conformational changes in Cas6 and primes TniQ recruitment through its C-terminal domain. The N-terminal domain of TniQ is bound to the seam region of the TnsC spiral heptamer. Our findings provide insights into the diverse mechanisms for the recruitment of Tn7-like transposons to CRISPR effectors and will aid in the development of CASTs as gene knockin tools.

Indexed as

AscomycotaCRISPR-Associated ProteinsCRISPR-Cas SystemsDNA Transposable ElementsGene Knock-In TechniquesCryoelectron MicroscopyCRISPR-Associated ProteinsDNA Transposable Elementscascade complexCRISPR-Cascryo-EMDNA transpositiongene knockingenome editingstructural biologyTn7-like transposonTniQTnsC

Identifiers

PMID37557170
PMCPMC11027886
OpenAlexW4385666881

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.