Evidence map›Paper›PMID 37553677›Full record

ArticlePlant methods2023

Rapid in-solution preparation of somatic and meiotic plant cell nuclei for high-quality 3D immunoFISH and immunoFISH-GISH.

Diána Makai, Edit Mihók, Dávid Polgári, András Cseh, Andrea Lenykó-Thegze, Adél Sepsi, László Sági

Open access · goldAbstract read
In one paragraph

Article in Plant methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Diána Makai *Centre for Agricultural Research, Eötvös Loránd Research Network, Martonvásár, 2462, Hungary.
Edit Mihók *Centre for Agricultural Research, Eötvös Loránd Research Network, Martonvásár, 2462, Hungary.
Dávid PolgáriCentre for Agricultural Research, Eötvös Loránd Research Network, Martonvásár, 2462, Hungary.
András CsehCentre for Agricultural Research, Eötvös Loránd Research Network, Martonvásár, 2462, Hungary.
Andrea Lenykó-ThegzeCentre for Agricultural Research, Eötvös Loránd Research Network, Martonvásár, 2462, Hungary.
Adél SepsiCentre for Agricultural Research, Eötvös Loránd Research Network, Martonvásár, 2462, Hungary. sepsi.adel@atk.hu.
László SágiAgribiotechnology and Precision Breeding for Food Security National Laboratory, Plant Biotechnology Section, Centre for Agricultural Research, Martonvásár, 2462, Hungary. sagi.laszlo@atk.hu.
Centre for Agricultural Research · HUHungarian Research NetworkMagyar Agrár- és Élettudományi Egyetem · HU

Funding

Hungarian National Laboratory Program RRF-2.3.1-21-2022-00007Hungarian Research, Development and Innovation Office 2021-1.2.4-TÉT-2021-00033Hungarian Research, Development and Innovation Office K 129 221Hungarian Research, Development and Innovation Office TKP2021-NKTA-06
6 · The paper itself

Abstract

backgroundThough multicolour labelling methods allow the routine detection of a wide range of fluorescent (immuno)probe types in molecular cytogenetics, combined applications for the simultaneous in situ detection of proteins and nucleic acids are still sporadic in plant cell biology. A major bottleneck has been the availability of high-quality plant nuclei with a balance between preservation of 3D ultrastructure and maintaining immunoreactivity. The aim of this study was to develop a quick and reliable procedure to prepare plant nuclei suitable for various combinations of immunolabelling and fluorescence in situ hybridisation methods (immunoFISH-GISH).

resultsThe mechanical removal of the cell wall and cytoplasm, instead of enzymatic degradation, resulted in a gentle, yet effective, cell permeabilisation. Rather than manually releasing the nuclei from the fixed tissues, the procedure involves in-solution cell handling throughout the fixation and the preparation steps as ended with pipetting the pure nuclei suspension onto microscope slides. The optimisation of several critical steps is described in detail. Finally, the procedure is shown to be compatible with immunolabelling, FISH and GISH as well as their simultaneous combinations.

conclusionA simple plant cell nuclei preparation procedure was developed for combined immunolabelling-in situ hybridisation methods. The main and critical elements of the procedure are: a short period of fixation, incorporation of detergents to facilitate the fixation of tissues and the penetration of probes, tissue grinding to eliminate unwanted cell components, and an optimal buffer to handle nuclei. The procedure is time efficient and is easily transferable without prior expertise.

Indexed as

BarleyCerealImmunolabellingIn situ hybridisationInterphase nucleiWheat

Identifiers

PMID37553677
PMCPMC10408160
OpenAlexW4385663253

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.