Evidence map›Paper›PMID 37552860›Full record

ArticleBiochemistry2023

CRISPR-Cas9 Activities with Truncated 16-Nucleotide RNA Guides Are Tuned by Target Duplex Stability Beyond the RNA/DNA Hybrid.

Yue Li, Brendon H Cooper, Yukang Liu, Difei Wu, Xiaojun Zhang, Remo Rohs, Peter Z Qin

Abstract read
In one paragraph

Article in Biochemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yue LiDepartment of Chemistry, University of Southern California, Los Angeles, California 90089, United States.
Brendon H CooperDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, California 90089, United States.
Yukang LiuDepartment of Chemistry, University of Southern California, Los Angeles, California 90089, United States.
Difei WuDepartment of Chemistry, University of Southern California, Los Angeles, California 90089, United States.
Xiaojun ZhangDepartment of Chemistry, University of Southern California, Los Angeles, California 90089, United States.
Remo RohsDepartment of Chemistry, University of Southern California, Los Angeles, California 90089, United States.ORCID 0000-0003-1752-1884
Peter Z QinDepartment of Chemistry, University of Southern California, Los Angeles, California 90089, United States.ORCID 0000-0003-3967-366X

Funding

Quantitative Modeling of Transcription Factor-DNA BindingR35GM130376 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Remo Rohs · 2019 to 2026
$3.3M
Supplement: Acquisition of an NGC Discover 10 Pro Chromatography SystemR35GM145341 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Peter Z Qin · 2022 to 2026
$2.1M
NIGMS NIH HHS R35 GM130376NIGMS NIH HHS R35 GM145341
6 · The paper itself

Abstract

CRISPR-Cas9 has been adapted as a readily programmable genome manipulation agent, and continuing technological advances rely on an in-depth mechanistic understanding of Cas9 target discrimination. Cas9 interrogates a target by unwinding the DNA duplex to form an R-loop, where the RNA guide hybridizes with one of the DNA strands. It has been shown that RNA guides shorter than the normal length of 20-nucleotide (-nt) support Cas9 cleavage activity by enabling partial unwinding beyond the RNA/DNA hybrid. To investigate whether DNA segment beyond the RNA/DNA hybrid can impact Cas9 target discrimination with truncated guides, Cas9 double-stranded DNA cleavage rates (

Indexed as

CRISPR-Cas SystemsRNADNAGene EditingNucleotidesDNANucleotidesRNA

Identifiers

PMID37552860
PMCPMC10578059

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.