Evidence map›Paper›PMID 37552253›Full record

ArticleApplied microbiology and biotechnology2023

Environmental modulation of exopolysaccharide production in the cyanobacterium Synechocystis 6803.

Mary Ann Madsen, Stefan Semerdzhiev, Jordan D Twigg, Claire Moss, Charles D Bavington, Anna Amtmann

Abstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Rhamnose biosynthesis is not impaired by the deletion of putativeApplied and environmental microbiology · 2025
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Optogenetic control of gene expression in the cyanobacteriumFrontiers in bioengineering and biotechnology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mary Ann MadsenSchool of Molecular Biosciences, College of Medical, Veterinary, and Life Sciences, University of Glasgow, Glasgow G12 8QQ, Scotland, UK.
Stefan SemerdzhievSchool of Molecular Biosciences, College of Medical, Veterinary, and Life Sciences, University of Glasgow, Glasgow G12 8QQ, Scotland, UK.
Jordan D TwiggSchool of Molecular Biosciences, College of Medical, Veterinary, and Life Sciences, University of Glasgow, Glasgow G12 8QQ, Scotland, UK.
Claire MossGlycoMar Ltd, Malin House, European Marine Science Park, Oban, Scotland, PA37 1SZ, UK.
Charles D BavingtonGlycoMar Ltd, Malin House, European Marine Science Park, Oban, Scotland, PA37 1SZ, UK.
Anna AmtmannSchool of Molecular Biosciences, College of Medical, Veterinary, and Life Sciences, University of Glasgow, Glasgow G12 8QQ, Scotland, UK. Anna.Amtmann@glasgow.ac.uk.ORCID http://orcid.org/0000-0001-8533-121X

Funding

Biotechnology and Biological Sciences Research Council BB/R019894/1Biotechnology and Biological Sciences Research Council BB/R505195/1Biotechnology and Biological Sciences Research Council IBCarb-BIV-0316
6 · The paper itself

Abstract

Microorganisms produce extracellular polymeric substances (EPS, also known as exopolysaccharides) of diverse composition and structure. The biochemical and biophysical properties of these biopolymers enable a wide range of industrial applications. EPS from cyanobacteria are particularly versatile as they incorporate a larger number and variety of building blocks and adopt more complex structures than EPS from other organisms. However, the genetic makeup and regulation of EPS biosynthetic pathways in cyanobacteria are poorly understood. Here, we measured the effect of changing culture media on titre and composition of EPS released by Synechocystis sp. PCC 6803, and we integrated this information with transcriptomic data. Across all conditions, daily EPS productivity of individual cells was highest in the early growth phase, but the total amount of EPS obtained from the cultures was highest in the later growth phases due to accumulation. Lowering the magnesium concentration in the media enhanced per-cell productivity but the produced EPS had a lower total sugar content. Levels of individual monosaccharides correlated with specific culture media components, e.g. xylose with sulfur, glucose and N-acetyl-galactosamine with NaCl. Comparison with RNA sequencing data suggests a Wzy-dependent biosynthetic pathway and a protective role for xylose-rich EPS. This multi-level analysis offers a handle to link individual genes to the dynamic modulation of a complex biopolymer. KEY POINTS: • Synechocystis exopolysaccharide amount and composition depends on culture condition • Production rate and sugar content can be modulated by Mg and S respectively • Wzy-dependent biosynthetic pathway and protective role proposed for xylose-rich EPS.

Indexed as

SynechocystisBiopolymersMonosaccharidesPolysaccharides, BacterialXyloseBiopolymersMonosaccharidesPolysaccharides, BacterialXyloseCyanobacteriaExopolysaccharidesExtracellular polymeric substancesNutrient limitationReleased polysaccharidesTranscriptomic analysis

Identifiers

PMID37552253
PMCPMC10485101

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.