Evidence map›Paper›PMID 37551561›Full record

ArticleProtein science : a publication of the Protein Society2023

A critical inter-subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase.

Hiral P Patel, Gabriela Martinez-Ramirez, Emily Dobrzynski, Alberto A Iglesias, Dali Liu, Miguel A Ballicora

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Hiral P PatelDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois, USA.
Gabriela Martinez-RamirezDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois, USA.
Emily DobrzynskiDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois, USA.
Alberto A Iglesias(UNL-CONICET), and FBCB, Santa Fe, Argentina.
Dali LiuDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois, USA.ORCID 0000-0002-7587-703X
Miguel A BallicoraDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois, USA.ORCID 0000-0002-5324-0724
Loyola University Chicago · USCentro Científico Tecnológico - Santa Fe · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ADP-glucose pyrophosphorylase is a key regulatory enzyme involved in starch and glycogen synthesis in plants and bacteria, respectively. It has been hypothesized that inter-subunit communications are important for the allosteric effect in this enzyme. However, no specific interactions have been identified as part of the regulatory signal. The enzyme from Agrobacterium tumefaciens is a homotetramer allosterically regulated by fructose 6-phosphate and pyruvate. Three pairs of distinct subunit-subunit interfaces are present. Here we focus on an interface that features two symmetrical interactions between Arg11 and Asp141 from one subunit with residues Asp141 and Arg11 of the neighbor subunit, respectively. Previously, scanning mutagenesis showed that a mutation at the Arg11 position disrupted the activation of the enzyme. Considering the distance of these residues from the allosteric and catalytic sites, we hypothesized that the interaction between Arg11 and Asp141 is critical for allosteric signaling rather than effector binding. To prove our hypothesis, we mutated those two sites (D141A, D141E, D141N, D141R, R11D, and R11K) and performed kinetic and binding analysis. Mutations that altered the charge affected the regulation the most. To prove that the interaction per se (rather than the presence of specific residues) is critical, we partially rescued the R11D protein by introducing a second mutation (R11D/D141R). This could not restore the activator effect on k

Indexed as

Agrobacterium tumefaciensStarchAllosteric RegulationGlucose-1-Phosphate AdenylyltransferaseKineticsMutationPyruvic AcidGlucose-1-Phosphate AdenylyltransferasePyruvic AcidStarchADP-glucose pyrophosphorylaseallosteric regulationkineticssubunit interaction

Identifiers

PMID37551561
PMCPMC10461462
OpenAlexW4385647726

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.