Evidence map›Paper›PMID 37550624›Full record

ArticleClinical proteomics2023

Proteomic analysis of 92 circulating proteins and their effects in cardiometabolic diseases.

Corinne Carland, Grace Png, Anders Malarstig, Pik Fang Kho, Stefan Gustafsson, Karl Michaelsson, Lars Lind, Emmanouil Tsafantakis, Maria Karaleftheri, George Dedoussis and 22 more

Open access · goldAbstract read
In one paragraph

Article in Clinical proteomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 15 institutions in 8 countries.

Corinne Carland *Department of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Grace Png *Institute of Translational Genomics, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Anders MalarstigDepartment of Medical Epidemiology and Biostatistics, Karolinska Institute, Stockholm, Sweden.
Pik Fang KhoDepartment of Medicine, Division of Cardiovascular Medicine, Stanford University School of Medicine, Stanford Cardiovascular Institute, Palo Alto, CA, USA.
Stefan GustafssonDepartment of Medical Sciences, Clinical Epidemiology, Uppsala University, Uppsala, Sweden.
Karl MichaelssonDepartment of Surgical Sciences, Medical Epidemiology, Uppsala University, Uppsala, Sweden.
Lars LindDepartment of Medical Sciences, Clinical Epidemiology, Uppsala University, Uppsala, Sweden.
Emmanouil TsafantakisAnogia Medical Centre, Anogia, Greece.
Maria KaraleftheriEchinos Medical Centre, Echinos, Greece.
George DedoussisDepartment of Nutrition and Dietetics, School of Health Science and Education, Harokopio University of Athens, Athens, Greece.
Anna RamischDepartment of Genetic Medicine and Development, Faculty of Medicine, University of Geneva Medical School, Geneva, Switzerland.
Erin Macdonald-DunlopCentre for Global Health Research, Usher Institute, University of Edinburgh, Edinburgh, Scotland.
Lucija KlaricMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, Scotland.
Peter K JoshiCentre for Global Health Research, Usher Institute, University of Edinburgh, Edinburgh, Scotland.
Yan ChenDepartment of Medical Epidemiology and Biostatistics, Karolinska Institute, Stockholm, Sweden.
Hanna M BjörckCardiovascular Medicine, Medicine, Karolinska Institute, Stockholm, Sweden.
Per ErikssonCardiovascular Medicine, Medicine, Karolinska Institute, Stockholm, Sweden.
Julia Carrasco-ZaniniMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.
Eleanor WheelerMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.
Karsten SuhreBioinformatics Core, Cornell Medicine - Qatar Research, Doha, Qatar.
Arthur GillyInstitute of Translational Genomics, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Eleftheria ZegginiInstitute of Translational Genomics, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Ana ViñuelaBiosciences Institute, Faculty of Medical Sciences, University of Newcastle, Newcastle, UK.
Emmanouil T DermitzakisDepartment of Genetic Medicine and Development, Faculty of Medicine, University of Geneva Medical School, Geneva, Switzerland.
James F WilsonCentre for Global Health Research, Usher Institute, University of Edinburgh, Edinburgh, Scotland.
Claudia LangenbergMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.
Gaurav TharejaBioinformatics Core, Cornell Medicine - Qatar Research, Doha, Qatar.
Anna HalamaBioinformatics Core, Cornell Medicine - Qatar Research, Doha, Qatar.
Frank SchmidtProteomics Core, Research, Weill Cornell Medicine - Qatar, Doha, Qatar.
SCALLOP Consortium
Daniela Zanetti *Department of Medicine, Division of Cardiovascular Medicine, Stanford University School of Medicine, Stanford Cardiovascular Institute, Palo Alto, CA, USA.
Themistocles Assimes *Department of Medicine, Division of Cardiovascular Medicine, Stanford University School of Medicine, Stanford Cardiovascular Institute, Palo Alto, CA, USA. tassimes@stanford.edu.
University of Edinburgh · GBWeill Cornell Medical College in Qatar · QACardiovascular Institute of the South · USHelmholtz Zentrum München · DEKarolinska Institutet · SEUppsala University · SEUniversity of Geneva · CHAthens Medical Center · GRHarokopio University of Athens · GRMRC Epidemiology Unit · GBNewcastle University · GBPfizer (Sweden) · SEQueen Mary University of London · GBUniversity of Cambridge · GBUniversity of Pennsylvania · US

Funding

Proteomic determinants of direct measures of insulin sensitivityR01DK114183 · NIDDK · STANFORD UNIVERSITY · PI ASSIMES, THEMISTOCLES LEONARD · 2018 to 2022
$3.5M
Medical Research Council MC_UU_00006/1Medical Research Council MC_UU_00007/10NIDDK NIH HHS R01 DK114183
6 · The paper itself

Abstract

backgroundHuman plasma contains a wide variety of circulating proteins. These proteins can be important clinical biomarkers in disease and also possible drug targets. Large scale genomics studies of circulating proteins can identify genetic variants that lead to relative protein abundance.

methodsWe conducted a meta-analysis on genome-wide association studies of autosomal chromosomes in 22,997 individuals of primarily European ancestry across 12 cohorts to identify protein quantitative trait loci (pQTL) for 92 cardiometabolic associated plasma proteins.

resultsWe identified 503 (337 cis and 166 trans) conditionally independent pQTLs, including several novel variants not reported in the literature. We conducted a sex-stratified analysis and found that 118 (23.5%) of pQTLs demonstrated heterogeneity between sexes. The direction of effect was preserved but there were differences in effect size and significance. Additionally, we annotate trans-pQTLs with nearest genes and report plausible biological relationships. Using Mendelian randomization, we identified causal associations for 18 proteins across 19 phenotypes, of which 10 have additional genetic colocalization evidence. We highlight proteins associated with a constellation of cardiometabolic traits including angiopoietin-related protein 7 (ANGPTL7) and Semaphorin 3F (SEMA3F).

conclusionThrough large-scale analysis of protein quantitative trait loci, we provide a comprehensive overview of common variants associated with plasma proteins. We highlight possible biological relationships which may serve as a basis for further investigation into possible causal roles in cardiometabolic diseases.

Indexed as

CardiologyGenomicsGWASMendelian randomizationProteomicsSex heterogeneity

Identifiers

PMID37550624
PMCPMC10405520
OpenAlexW4385633678

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.