Evidence map›Paper›PMID 37550609›Full record

ArticleBMC ecology and evolution2023

History of the terrestrial isopod genus Ligidium in Japan based on phylogeographic analysis.

Wakana Harigai, Aya Saito, Chika Zemmoto, Shigenori Karasawa, Touta Yokoi, Atsushi J Nagano, Hitoshi Suzuki, Masanobu Yamamoto

Open access · goldAbstract read
In one paragraph

Article in BMC ecology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Wakana HarigaiGraduate School of Environmental Science, Hokkaido University, Kita-Ku, Sapporo, 060-0810, Japan. harigai.w@gmail.com.
Aya SaitoDepartment of Earth and Planetary Sciences, Faculty of Science, Hokkaido University, Kita-Ku, Sapporo, 060-0810, Japan.
Chika ZemmotoDepartment of Earth and Planetary Sciences, Faculty of Science, Hokkaido University, Kita-Ku, Sapporo, 060-0810, Japan.
Shigenori KarasawaFaculty of Agriculture, Tottori University, 4-101, Koyama-Cho Minami, Tottori, 680-8553, Japan.
Touta YokoiFaculty of Agriculture, Tottori University, 4-101, Koyama-Cho Minami, Tottori, 680-8553, Japan.
Atsushi J NaganoFaculty of Agriculture, Ryukoku University, Otsu, Shiga, 520-2194, Japan.
Hitoshi SuzukiGraduate School of Environmental Science, Hokkaido University, Kita-Ku, Sapporo, 060-0810, Japan.
Masanobu YamamotoGraduate School of Environmental Science, Hokkaido University, Kita-Ku, Sapporo, 060-0810, Japan.
Hokkaido University · JPTottori University · JPKeio University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPhylogeographical approaches explain the genetic diversity of local organisms in the context of their geological and geographic environments. Thus, genetic diversity can be a proxy for geological history. Here we propose a genus of woodland isopod, Ligidium, as a marker of geological history in relation to orogeny and the Quaternary glacial cycle.

resultsMitochondrial analysis of 721 individuals from 97 sites across Japan revealed phylogenetic divergence between the northeastern and southwestern Japan arcs. It also showed repeated population expansions in northeastern Japan in response to Quaternary glacial and interglacial cycles. Genome-wide analysis of 83 selected individuals revealed multiple genetic nuclear clusters. The genomic groupings were consistent with the local geographic distribution, indicating that the Ligidium phylogeny reflects its regional history.

conclusionLigidium DNA sequence analysis can provide insight into the geological, geographical, and paleoenvironmental history of the studied region.

Indexed as

IsopodaAnimalsForestsGenetic VariationHumansJapanPhylogenyPhylogeographyGenome-wide analysisGeologyLigidiumPhylogeographyQuaternary glacial cycleRAD-seq

Identifiers

PMID37550609
PMCPMC10405464
OpenAlexW4385630385

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.