Evidence map›Paper›PMID 37550505›Full record

ArticleNature microbiology2023

Histones direct site-specific CRISPR spacer acquisition in model archaeon.

Elizabeth A Watts, Sandra C Garrett, Ryan J Catchpole, Landon M Clark, Travis J Sanders, Craig J Marshall, Breanna R Wenck, Robert L Vickerman, Thomas J Santangelo, Ryan Fuchs and 4 more

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Elizabeth A Watts *University of Georgia, Athens, GA, USA.
Sandra C Garrett *UConn Health, Farmington, CT, USA.
Ryan J CatchpoleUniversity of Georgia, Athens, GA, USA.
Landon M ClarkUniversity of Georgia, Athens, GA, USA.ORCID 0000-0002-1537-4692
Travis J SandersColorado State University, Fort Collins, CO, USA.
Craig J MarshallColorado State University, Fort Collins, CO, USA.
Breanna R WenckColorado State University, Fort Collins, CO, USA.
Robert L VickermanColorado State University, Fort Collins, CO, USA.
Thomas J SantangeloColorado State University, Fort Collins, CO, USA.ORCID 0000-0003-4559-3244
Ryan FuchsNew England Biolabs, Ipswich, MA, USA.ORCID 0000-0001-8238-6442
Brett RobbNew England Biolabs, Ipswich, MA, USA.ORCID 0000-0002-2382-2256
Sara OlsonUConn Health, Farmington, CT, USA.
Brenton R GraveleyUConn Health, Farmington, CT, USA. graveley@uchc.edu.ORCID 0000-0001-5777-5892
Michael P TernsUniversity of Georgia, Athens, GA, USA. mterns@uga.edu.ORCID 0000-0001-8330-1789
Colorado State University · USUniversity of Georgia · USUConn Health · USNew England Biolabs (United States) · US

Funding

Genomic Analysis of Nucleic Acid TransactionsR35GM118140 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2016 to 2025
$6.8M
CRISPR Capture, Destroy, and Counter-Attack MechanismsR35GM118160 · NIGMS · UNIVERSITY OF GEORGIA · PI TERNS, MICHAEL P · 2016 to 2025
$5.8M
Mechanisms of Archaeal Transcription Termination - Administrative SupplementR01GM100329 · NIGMS · OHIO STATE UNIVERSITY · PI SANTANGELO, THOMAS JAMES · 2012 to 2021
$2.5M
Regulation of Archaeal TranscriptionR35GM143963 · NIGMS · COLORADO STATE UNIVERSITY · PI Thomas James Santangelo · 2022 to 2026
$1.8M
NIGMS NIH HHS R01 GM100329NIGMS NIH HHS R35 GM118140NIGMS NIH HHS R35 GM118160NIGMS NIH HHS R35 GM143963
6 · The paper itself

Abstract

CRISPR-Cas systems provide heritable immunity against viruses and other mobile genetic elements by incorporating fragments of invader DNA into the host CRISPR array as spacers. Integration of new spacers is localized to the 5' end of the array, and in certain Gram-negative Bacteria this polarized localization is accomplished by the integration host factor. For most other Bacteria and Archaea, the mechanism for 5' end localization is unknown. Here we show that archaeal histones play a key role in directing integration of CRISPR spacers. In Pyrococcus furiosus, deletion of either histone A or B impairs integration. In vitro, purified histones are sufficient to direct integration to the 5' end of the CRISPR array. Archaeal histone tetramers and bacterial integration host factor induce similar U-turn bends in bound DNA. These findings indicate a co-evolution of CRISPR arrays with chromosomal DNA binding proteins and a widespread role for binding and bending of DNA to facilitate accurate spacer integration.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsHistonesArchaeaBacteriaDNAIntegration Host FactorsDNAHistonesIntegration Host Factors

Identifiers

PMID37550505
PMCPMC10823912
OpenAlexW4385638973

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.