Evidence map›Paper›PMID 37549270›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Association of vaccination, international travel, public health and social measures with lineage dynamics of SARS-CoV-2.

Lingyue Yang, Zengmiao Wang, Lin Wang, Bram Vrancken, Ruixue Wang, Yuanlong Wei, Benjamin Rader, Chieh-Hsi Wu, Yuyang Chen, Peiyi Wu and 9 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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  8. Complex Interplay between Population Immunity and Viral Dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Association of vaccination, international travel, public health and social measures with lineage dynamics of SARS-CoV-2.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 5 countries.

Lingyue Yang *State Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.
Zengmiao Wang *State Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.
Lin Wang *Department of Genetics, University of Cambridge, Cambridge CB2 3EH, United Kingdom.ORCID 0000-0002-5371-2138
Bram VranckenDepartment of Microbiology and Immunology, Rega Institute, Laboratory of Evolutionary and Computational Virology, KU Leuven, Leuven 3000, Belgium.
Ruixue WangState Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.
Yuanlong WeiState Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.
Benjamin RaderComputational Epidemiology Lab, Boston Children's Hospital, Boston, MA 02215.ORCID 0000-0002-6095-0193
Chieh-Hsi WuMathematical Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom.
Yuyang ChenState Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.
Peiyi WuState Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.
Bingying LiState Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.
Qiushi LinState Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.
Lu DongCollege of Life Sciences, Beijing Normal University, Beijing 100875, China.
Yujun CuiState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China.ORCID 0000-0001-7236-2412
Mang ShiThe Centre for Infection and Immunity Studies, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China.ORCID 0000-0002-6154-4437
John S BrownsteinSpatial Epidemiology Lab, Université Libre de Bruxelles, 1050 Bruxelles, Belgium.
Nils Chr StensethThe Centre for Pandemics and One-Health Research, Sustainable Health Unit, Faculty of Medicine, University of Oslo, Oslo 0316, Norway.ORCID 0000-0002-1591-5399
Ruifu YangState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China.
Huaiyu TianState Key Laboratory of Remote Sensing Science, Center for Global Change and Public Health, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.
Beijing Normal University · CNInstitute of Microbiology · CNUniversité Libre de Bruxelles · BEBoston University · USSun Yat-sen University · CNUniversity of Cambridge · GBUniversity of Oslo · NOUniversity of Southampton · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Continually emerging SARS-CoV-2 variants of concern that can evade immune defenses are driving recurrent epidemic waves of COVID-19 globally. However, the impact of measures to contain the virus and their effect on lineage diversity dynamics are poorly understood. Here, we jointly analyzed international travel, public health and social measures (PHSM), COVID-19 vaccine rollout, SARS-CoV-2 lineage diversity, and the case growth rate (GR) from March 2020 to September 2022 across 63 countries. We showed that despite worldwide vaccine rollout, PHSM are effective in mitigating epidemic waves and lineage diversity. An increase of 10,000 monthly travelers in a single country-to-country route between endemic countries corresponds to a 5.5% (95% CI: 2.9 to 8.2%) rise in local lineage diversity. After accounting for PHSM, natural immunity from previous infections, and waning immunity, we discovered a negative association between the GR of cases and adjusted vaccine coverage (AVC). We also observed a complex relationship between lineage diversity and vaccine rollout. Specifically, we found a significant negative association between lineage diversity and AVC at both low and high levels but not significant at the medium level. Our study deepens the understanding of population immunity and lineage dynamics for future pandemic preparedness and responsiveness.

Indexed as

COVID-19SARS-CoV-2COVID-19 VaccinesHumansPandemicsPublic HealthVaccinationCOVID-19 VaccinesCOVID-19international travellineage diversitypublic health and social measuresvaccines

Identifiers

PMID37549270
PMCPMC10434302
OpenAlexW4385618176

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.